NP-MRD: Showing NP-Card for 5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate (NP0299351)

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Record Information

Version

2.0

Created at

2022-09-10 11:07:52 UTC

Updated at

2022-09-10 11:07:52 UTC

NP-MRD ID

NP0299351

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate

Description

5,6,7-Trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]Nonadec-3-en-17-yl benzoate belongs to the class of organic compounds known as rhamnofolane and daphnane diterpenoids. These are diterpenoids with a structure based on one the rhamnofolane or daphnane skeleton. The rhamnofolane and daphnane skeletons are closely related, being formally derived from casbane by two cyclizations (6,10 and 5,14) followed by cleavage of the 1,15 (daphnane) or 2,15 (rhamnofolane) cyclopropane bonds. 5,6,7-Trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]Nonadec-3-en-17-yl benzoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171503552D          

 44 51  0  0  0  0            999 V2000
    2.7981    0.1922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1275   -0.2488    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3952   -0.7762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5909   -1.4856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582   -2.2914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2091   -2.2849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5476   -3.0674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3726   -3.0643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7878   -3.7772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3780   -4.4933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5530   -4.4963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1378   -3.7834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9523   -0.0291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0907   -0.0532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0169    0.7591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5286    1.3666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0620    0.9752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8776    0.8506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7026    0.8490    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2887    0.1353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3213    0.0388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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 13 42  1  0  0  0  0
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 42 44  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1533004171503552D          

 44 51  0  0  0  0            999 V2000
    2.7981    0.1922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9523   -0.0291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0907   -0.0532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0169    0.7591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5286    1.3666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3149    1.0148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0620    0.9752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8776    0.8506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7026    0.8490    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2887    0.1353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3213    0.0388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0824    0.4523    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9858   -0.6321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8412   -0.9270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1970   -0.8737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0424   -1.3129    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9641   -1.6651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4983   -2.4173    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2404   -1.7465    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8626   -0.9110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5162   -0.4076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4562    0.4152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6113    0.3120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7685   -2.6330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4425    1.4658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2674    1.4506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6930    2.1574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2937    2.8793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4689    2.8945    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0433    2.1878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -0.9828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6835   -1.1058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1932   -1.7859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  7 12  1  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 26 32  1  0  0  0  0
 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 18 33  1  0  0  0  0
 33 34  1  0  0  0  0
 15 34  1  0  0  0  0
 30 35  1  0  0  0  0
 15 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 36 41  1  0  0  0  0
 13 42  1  0  0  0  0
 42 43  2  0  0  0  0
 42 44  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0299351

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1C(OC(=O)C2=CC=CC=C2)C2(OC3(OC2C2C4OC4(CO)C(O)C4(O)C(O)C(C)=CC4C12O3)C1=CC=CC=C1)C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C34H36O10/c1-17(2)32-25(40-28(37)20-11-7-5-8-12-20)19(4)33-22-15-18(3)24(36)31(22,39)29(38)30(16-35)26(41-30)23(33)27(32)42-34(43-32,44-33)21-13-9-6-10-14-21/h5-15,19,22-27,29,35-36,38-39H,1,16H2,2-4H3

> <INCHI_KEY>
SMDBUFUJZPXXCU-UHFFFAOYSA-N

> <FORMULA>
C34H36O10

> <MOLECULAR_WEIGHT>
604.652

> <EXACT_MASS>
604.230847359

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
62.45979475522097

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate

> <ALOGPS_LOGP>
2.45

> <JCHEM_LOGP>
2.877809595333335

> <ALOGPS_LOGS>
-3.32

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.356972371732454

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.192475760488517

> <JCHEM_PKA_STRONGEST_BASIC>
-3.149426170735529

> <JCHEM_POLAR_SURFACE_AREA>
147.44

> <JCHEM_REFRACTIVITY>
154.25909999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.89e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       5.223   0.359   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.971  -0.464   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.604  -1.449   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.970  -2.773   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.162  -4.277   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       0.390  -4.265   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.889  -5.726   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.429  -5.720   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.204  -7.051   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.439  -8.387   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.899  -8.393   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.124  -7.062   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.778  -0.054   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.169  -0.099   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.032   1.417   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       0.987   2.551   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       2.454   1.894   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.849   1.820   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.371   1.588   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       6.911   1.585   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.139   0.253   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.066   0.072   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.487   0.844   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.573  -1.180   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       7.170  -1.730   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       4.101  -1.631   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       5.679  -2.451   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       3.666  -3.108   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       4.664  -4.512   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       2.315  -3.260   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.610  -1.701   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.830  -0.761   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.718   0.775   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       1.141   0.582   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       1.435  -4.915   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -0.826   2.736   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -2.366   2.708   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -3.160   4.027   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -2.415   5.375   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -0.875   5.403   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -0.081   4.084   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       0.475  -1.835   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      -1.276  -2.064   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -0.361  -3.334   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   33                                                  
CONECT    3    2    4   13                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    7                                                       
CONECT   13    3   14   17   42                                             
CONECT   14   13   15                                                       
CONECT   15   14   16   34   36                                             
CONECT   16   15   17                                                       
CONECT   17   16   13   18                                                  
CONECT   18   17   19   33                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   21                                                       
CONECT   21   20   19   22   24                                             
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28   32                                             
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   26   33                                                  
CONECT   33   32    2   18   34                                             
CONECT   34   33   15                                                       
CONECT   35   30                                                            
CONECT   36   15   37   41                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   36                                                       
CONECT   42   13   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42                                                            
MASTER        0    0    0    0    0    0    0    0   44    0  102    0
END

View in JSmol

Synonyms

Value	Source
5,6,7-Trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0,.0,.0,.0,]nonadec-3-en-17-yl benzoic acid	Generator

Chemical Formula

C₃₄H₃₆O₁₀

Average Mass

604.6520 Da

Monoisotopic Mass

604.23085 Da

IUPAC Name

5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate

Traditional Name

5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate

CAS Registry Number

Not Available

SMILES

CC1C(OC(=O)C2=CC=CC=C2)C2(OC3(OC2C2C4OC4(CO)C(O)C4(O)C(O)C(C)=CC4C12O3)C1=CC=CC=C1)C(C)=C

InChI Identifier

InChI=1S/C34H36O10/c1-17(2)32-25(40-28(37)20-11-7-5-8-12-20)19(4)33-22-15-18(3)24(36)31(22,39)29(38)30(16-35)26(41-30)23(33)27(32)42-34(43-32,44-33)21-13-9-6-10-14-21/h5-15,19,22-27,29,35-36,38-39H,1,16H2,2-4H3

InChI Key

SMDBUFUJZPXXCU-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as rhamnofolane and daphnane diterpenoids. These are diterpenoids with a structure based on one the rhamnofolane or daphnane skeleton. The rhamnofolane and daphnane skeletons are closely related, being formally derived from casbane by two cyclizations (6,10 and 5,14) followed by cleavage of the 1,15 (daphnane) or 2,15 (rhamnofolane) cyclopropane bonds.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Rhamnofolane and daphnane diterpenoids

Alternative Parents

Substituents

Daphnane diterpenoid
Benzoate ester
Benzoic acid or derivatives
Benzoyl
1,3-dioxepane
Carboxylic acid orthoester
Ortho ester
Dioxepane
Meta-dioxane
Monocyclic benzene moiety
Benzenoid
Meta-dioxolane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Orthocarboxylic acid derivative
Dialkyl ether
Polyol
Carboxylic acid derivative
Organoheterocyclic compound
Oxacycle
Monocarboxylic acid or derivatives
Oxirane
Ether
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Primary alcohol
Organic oxygen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.45	ALOGPS
logP	2.88	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	12.19	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	147.44 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	154.26 m³·mol⁻¹	ChemAxon
Polarizability	62.46 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73022496

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate (NP0299351)

MOL for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

3D MOL for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

3D SDF for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

3D-SDF for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

PDB for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

3D PDB for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

SMILES for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

INCHI for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

Structure for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)

3D Structure for NP0299351 (5,6,7-trihydroxy-8-(hydroxymethyl)-4,18-dimethyl-14-phenyl-16-(prop-1-en-2-yl)-9,13,15,19-tetraoxahexacyclo[12.4.1.0¹,¹¹.0²,⁶.0⁸,¹⁰.0¹²,¹⁶]nonadec-3-en-17-yl benzoate)