NP-MRD: Showing NP-Card for 2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol (NP0298869)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-10 10:23:27 UTC

Updated at

2022-09-10 10:23:27 UTC

NP-MRD ID

NP0298869

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol

Description

2-(4,8-Dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups. 2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol is found in Dumortiera hirsuta, Ferula communis and Psidium guajava. 2-(4,8-Dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004161513252D          

 16 16  0  0  0  0            999 V2000
    0.8889    2.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2391    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7792    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5091    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6990    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8955    0.2878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.6789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6188   -0.8348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0787   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3488    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1589    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7314   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5415   -0.5230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8873    0.4431    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5755   -1.1772    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  4  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  4  0  0  0
 11 12  2  0  0  0  0
  2 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0298869

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1CCC=C(C)CCC(C=C1)C(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O/c1-12-6-5-7-13(2)9-11-14(10-8-12)15(3,4)16/h6,9,11,13-14,16H,5,7-8,10H2,1-4H3

> <INCHI_KEY>
ZVZPKUXZGROCDB-UHFFFAOYSA-N

> <FORMULA>
C15H26O

> <MOLECULAR_WEIGHT>
222.372

> <EXACT_MASS>
222.198365457

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
27.400134085259385

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol

> <ALOGPS_LOGP>
4.83

> <JCHEM_LOGP>
3.877669607333332

> <ALOGPS_LOGS>
-3.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.29647510280105

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9195217900348193

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
72.5311

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.45e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0       1.659   3.971   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667   2.807   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.180   3.098   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.188   1.934   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.684   0.479   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.171   0.188   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.672   0.537   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -1.267   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.155  -1.558   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.147  -0.394   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.651   1.061   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.163   1.352   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.365  -0.685   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.878  -0.976   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.656   0.827   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.074  -2.197   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   12                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11    2                                                       
CONECT   13   10   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₆O

Average Mass

222.3720 Da

Monoisotopic Mass

222.19837 Da

IUPAC Name

2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol

Traditional Name

2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol

CAS Registry Number

Not Available

SMILES

CC1CCC=C(C)CCC(C=C1)C(C)(C)O

InChI Identifier

InChI=1S/C15H26O/c1-12-6-5-7-13(2)9-11-14(10-8-12)15(3,4)16/h6,9,11,13-14,16H,5,7-8,10H2,1-4H3

InChI Key

ZVZPKUXZGROCDB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dumortiera hirsuta	LOTUS Database	35616633
Ferula communis	LOTUS Database	35616633
Psidium guajava	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Germacrane sesquiterpenoids

Alternative Parents

Substituents

Germacrane sesquiterpenoid
Tertiary alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

a sesquiterpenoid derivative (CPD-10159 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.83	ALOGPS
logP	3.88	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	19.3	ChemAxon
pKa (Strongest Basic)	-0.92	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	72.53 m³·mol⁻¹	ChemAxon
Polarizability	27.4 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73237633

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol (NP0298869)

MOL for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

3D MOL for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

3D SDF for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

3D-SDF for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

PDB for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

3D PDB for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

SMILES for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

INCHI for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

Structure for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)

3D Structure for NP0298869 (2-(4,8-dimethylcyclodeca-2,7-dien-1-yl)propan-2-ol)