NP-MRD: Showing NP-Card for n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine (NP0297650)

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Record Information

Version

2.0

Created at

2022-09-10 08:11:25 UTC

Updated at

2022-09-10 08:11:26 UTC

NP-MRD ID

NP0297650

Secondary Accession Numbers

None

Natural Product Identification

Common Name

n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine

Description

Siphonodictidine belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring. n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine was first documented in 2004 (PMID: 15332858). Based on a literature review very few articles have been published on Siphonodictidine (PMID: 19023625).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 45 45  0  0  0  0  0  0  0  0999 V2000
    6.7897   -0.5185    0.6581 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9534    0.4345    1.0534 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0020    1.2971    1.0551 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1922    2.5977    1.5839 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7284    0.9719    0.5259 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1033   -0.2519    1.0144 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7936   -0.4359    0.3651 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5385   -1.5217   -0.3742 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6007   -2.5469   -0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2144   -1.7015   -1.0275 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2863   -0.5484   -0.7384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0371   -0.7291   -1.3924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1697   -0.7901   -0.7255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1738   -0.6776    0.7536 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4659   -0.9729   -1.4347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3181    0.1984   -1.1261 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1851    0.2865   -0.0781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7694    1.5434   -0.1684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7843    2.1511    0.7225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2280    2.1589   -1.2688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3831    1.3428   -1.8043 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3263    2.8002    2.5865 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1958    3.3988    0.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2328    1.5576   -0.1806 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8116   -1.0688    0.7993 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9915   -0.1036    2.1227 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0201    0.3102    0.4803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4319   -2.1999   -1.1677 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9781   -2.8986    0.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1435   -3.4399   -1.0032 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3918   -1.7124   -2.1140 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7989   -2.6707   -0.6597 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1167   -0.4006    0.3582 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7553    0.3699   -1.1150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0898   -0.8172   -2.4774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1476   -0.9359    1.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9310    0.3478    1.1057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4486   -1.4313    1.1610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9570   -1.8955   -1.0123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3395   -1.1540   -2.5095 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4312   -0.4023    0.6940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2651    2.5570    1.6353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2983    2.9776    0.1999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5216    1.3686    0.9979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4527    3.1554   -1.6447 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 18 20  2  0
 20 21  1  0
  8  7  2  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
  3  2  2  0
 21 16  1  0
  9 28  1  0
  9 29  1  0
  9 30  1  0
 10 31  1  0
 10 32  1  0
 11 33  1  0
 11 34  1  0
 12 35  1  0
 14 36  1  0
 14 37  1  0
 14 38  1  0
 15 39  1  0
 15 40  1  0
 17 41  1  0
 19 42  1  0
 19 43  1  0
 19 44  1  0
 20 45  1  0
  7 27  1  0
  6 25  1  0
  6 26  1  0
  5 24  1  0
  4 22  1  0
  4 23  1  0
  2  1  1  0
M  END


  Mrv1652309102210112D          

 20 20  0  0  0  0            999 V2000
   -2.2901    4.4143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5757    4.8268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5757    5.6518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2901    6.0643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2901    6.8893    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0046    7.3018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0046    8.1268    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7191    6.8893    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8612    4.4143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8612    3.5893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1467    3.1768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1467    2.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8612    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4652   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 19 20  1  0  0  0  0
 15 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0297650

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(CC\C=C(/C)CC1=CC(C)=CO1)=C/CNC(N)=N

> <INCHI_IDENTIFIER>
InChI=1S/C16H25N3O/c1-12(7-8-19-16(17)18)5-4-6-13(2)9-15-10-14(3)11-20-15/h6-7,10-11H,4-5,8-9H2,1-3H3,(H4,17,18,19)/b12-7+,13-6+

> <INCHI_KEY>
RTXKGOPKSCBFSW-GTAKWKLUSA-N

> <FORMULA>
C16H25N3O

> <MOLECULAR_WEIGHT>
275.396

> <EXACT_MASS>
275.199762437

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
32.92893579845823

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
N-[(2E,6E)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine

> <JCHEM_LOGP>
3.0578639596666672

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
11.996697534722593

> <JCHEM_POLAR_SURFACE_AREA>
75.04

> <JCHEM_REFRACTIVITY>
95.8363

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
N-[(2E,6E)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.275   8.240   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.941   9.010   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.941  10.550   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.275  11.320   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0      -4.275  12.860   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0      -5.609  13.630   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0      -5.609  15.170   0.000  0.00  0.00           N+0
HETATM    8  N   UNK     0      -6.942  12.860   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -1.608   8.240   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.608   6.700   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.274   5.930   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.274   4.390   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.608   3.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.060   3.620   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.735  -1.536   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.186   1.175   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    9                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    2   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   15                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₅N₃O

Average Mass

275.3960 Da

Monoisotopic Mass

275.19976 Da

IUPAC Name

N-[(2E,6E)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine

Traditional Name

N-[(2E,6E)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine

CAS Registry Number

Not Available

SMILES

C\C(CC\C=C(/C)CC1=CC(C)=CO1)=C/CNC(N)=N

InChI Identifier

InChI=1S/C16H25N3O/c1-12(7-8-19-16(17)18)5-4-6-13(2)9-15-10-14(3)11-20-15/h6-7,10-11H,4-5,8-9H2,1-3H3,(H4,17,18,19)/b12-7+,13-6+

InChI Key

RTXKGOPKSCBFSW-GTAKWKLUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Aromatic monoterpenoids

Alternative Parents

Substituents

Aromatic monoterpenoid
Monocyclic monoterpenoid
Furan
Heteroaromatic compound
Guanidine
Oxacycle
Organoheterocyclic compound
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.06	ChemAxon
pKa (Strongest Basic)	12	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	75.04 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	95.84 m³·mol⁻¹	ChemAxon
Polarizability	32.93 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4946714

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6442647

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Chaves-Fonnegra A, Castellanos L, Zea S, Duque C, Rodriguez J, Jimenez C: Clionapyrrolidine A--a metabolite from the encrusting and excavating sponge Cliona tenuis that kills coral tissue upon contact. J Chem Ecol. 2008 Dec;34(12):1565-74. doi: 10.1007/s10886-008-9565-5. Epub 2008 Nov 21. [PubMed:19023625 ]
Jefford CW, Rossier JC, Boukouvalas J, Sledeski AW, Huang PZ: A concise synthesis of siphonodictidine. J Nat Prod. 2004 Aug;67(8):1383-6. doi: 10.1021/np0400860. [PubMed:15332858 ]
LOTUS database [Link]

Showing NP-Card for n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine (NP0297650)

MOL for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

3D MOL for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

3D SDF for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

3D-SDF for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

PDB for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

3D PDB for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

SMILES for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

INCHI for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

Structure for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)

3D Structure for NP0297650 (n-[(2e,6e)-3,7-dimethyl-8-(4-methylfuran-2-yl)octa-2,6-dien-1-yl]guanidine)