NP-MRD: Showing NP-Card for (3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one (NP0297461)

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Record Information

Version

2.0

Created at

2022-09-10 07:49:23 UTC

Updated at

2022-09-10 07:49:23 UTC

NP-MRD ID

NP0297461

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one

Description

Sonchuside D belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton. (3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one is found in Sonchus asper and Sonchus oleraceus. Based on a literature review very few articles have been published on Sonchuside D.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102209492D          

 29 32  0  0  1  0            999 V2000
    4.2295    1.3982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5995    0.8656    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6601    0.0428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3613   -0.3918    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8963   -0.2691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3637    0.3610    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7983    1.0622    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4083    1.7892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5837    1.8150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1491    1.1137    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7591    1.8407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5391    0.3867    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1045   -0.3145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4944   -1.0415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2799   -0.2887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1101    0.4383    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3245    1.1395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0655    1.8665    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3691    2.5677    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1937    2.5420    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6283    3.2432    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4529    3.2175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8429    2.4905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383    3.9702    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6729    4.6715    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4137    3.9960    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0237    4.7230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0209    3.2948    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8455    3.3205    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  2  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  1  0  0  0
 19 18  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 19 28  1  0  0  0  0
 28 29  1  6  0  0  0
M  END

     RDKit          3D

 59 62  0  0  0  0  0  0  0  0999 V2000
    4.6339    2.3851    2.3412 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4591    1.6046    1.2987 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4470    0.7951    0.5683 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6893    0.7844    0.8075 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7408    0.0662   -0.4127 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4613   -0.1294    0.1711 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1910    1.3338    0.5747 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9922    1.2931    1.4752 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8221    0.7546    0.7318 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0725   -0.4895   -0.0424 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0116   -1.6613    0.9458 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4044   -0.5270   -0.7645 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5454   -1.8699   -1.3854 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6556   -2.5619   -1.2526 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4197   -2.4677   -2.1604 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0888   -2.1484   -1.5341 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0138   -0.7022   -1.0889 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2524   -0.5672   -0.5642 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1321    0.3062   -1.0861 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3058    1.2927   -0.1262 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5843    1.5800    0.2175 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5093    2.4743    1.4670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8581    1.7714    2.4778 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3087    0.3266    0.6752 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5178    0.6487    1.2547 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4031   -0.5972   -0.4867 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2534   -1.9477   -0.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4266   -0.2412   -1.5850 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0449    0.7486   -2.3696 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7884    2.9034    2.7450 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5789    2.5442    2.8267 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5735   -0.7326    1.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0660    1.9519   -0.3196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2510    0.7659    2.3962 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7659    2.3506    1.7622 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4616    1.5515    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0333    0.5063    1.5019 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4608   -1.2946    1.9136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0646   -1.8105    1.1648 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5170   -2.5492    0.5685 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3319    0.2604   -1.5645 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4750   -2.1536   -0.6868 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7695   -3.5580   -1.7099 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4161   -2.1796   -3.2277 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5418   -3.5668   -2.1183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1469   -2.8330   -0.6796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7086   -2.3251   -2.2919 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2402   -0.0795   -1.9448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6416    0.8300   -1.9581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1665    2.1651   -0.5169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5085    2.7557    1.8165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8787    3.3650    1.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2031    1.1163    2.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6435   -0.1518    1.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2285    0.7895    0.6043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4232   -0.5098   -0.9170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0618   -2.4671   -0.2530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3260   -1.1129   -2.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2937    1.2133   -2.8567 H   0  0  0  0  0  0  0  0  0  0  0  0
 10 11  1  1
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  6 12  1  0
 12 13  1  0
 13 14  2  3
 13 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 21 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 12 10  1  0
 28 19  1  0
 17 10  1  0
  2  7  1  0
 11 38  1  0
 11 39  1  0
 11 40  1  0
  9 36  1  0
  9 37  1  0
  8 34  1  0
  8 35  1  0
  7 33  1  6
  6 32  1  1
  1 30  1  0
  1 31  1  0
 12 41  1  6
 14 42  1  0
 14 43  1  0
 15 44  1  0
 15 45  1  0
 16 46  1  0
 16 47  1  0
 17 48  1  6
 19 49  1  6
 21 50  1  6
 22 51  1  0
 22 52  1  0
 23 53  1  0
 24 54  1  1
 25 55  1  0
 26 56  1  6
 27 57  1  0
 28 58  1  6
 29 59  1  0
M  END


  Mrv1652309102209492D          

 29 32  0  0  1  0            999 V2000
    4.2295    1.3982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5995    0.8656    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6601    0.0428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3613   -0.3918    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8963   -0.2691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3637    0.3610    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7983    1.0622    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4083    1.7892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5837    1.8150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1491    1.1137    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7591    1.8407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5391    0.3867    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1045   -0.3145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4944   -1.0415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2799   -0.2887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1101    0.4383    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3245    1.1395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0655    1.8665    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3691    2.5677    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1937    2.5420    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6283    3.2432    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4529    3.2175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8429    2.4905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383    3.9702    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6729    4.6715    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4137    3.9960    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0237    4.7230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0209    3.2948    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8455    3.3205    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  2  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  1  0  0  0
 19 18  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 19 28  1  0  0  0  0
 28 29  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0297461

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12CC[C@@H]3[C@H](OC(=O)C3=C)[C@H]1C(=C)CC[C@H]2O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H30O8/c1-9-4-5-13(28-20-17(25)16(24)15(23)12(8-22)27-20)21(3)7-6-11-10(2)19(26)29-18(11)14(9)21/h11-18,20,22-25H,1-2,4-8H2,3H3/t11-,12+,13+,14+,15+,16-,17+,18-,20-,21-/m0/s1

> <INCHI_KEY>
QSICJOYMTYAQST-FODMJVDISA-N

> <FORMULA>
C21H30O8

> <MOLECULAR_WEIGHT>
410.463

> <EXACT_MASS>
410.194067926

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
43.09440600488274

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3aS,5aR,6R,9aS,9bS)-5a-methyl-3,9-dimethylidene-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dodecahydronaphtho[1,2-b]furan-2-one

> <JCHEM_LOGP>
0.4342823393333327

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.200084954483305

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.210548221669958

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083544054693

> <JCHEM_POLAR_SURFACE_AREA>
125.68000000000002

> <JCHEM_REFRACTIVITY>
100.0492

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3aS,5aR,6R,9aS,9bS)-5a-methyl-3,9-dimethylidene-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       7.895   2.610   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.719   1.616   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.832   0.080   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.141  -0.731   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       5.406  -0.502   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       4.412   0.674   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.223   1.983   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.495   3.340   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.956   3.388   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.145   2.079   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.417   3.436   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.873   0.722   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.062  -0.587   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.790  -1.944   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.522  -0.539   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.206   0.818   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.606   2.127   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.122   3.484   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.689   4.793   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.228   4.745   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       3.040   6.054   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.579   6.006   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.307   4.649   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.312   7.411   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.123   8.720   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       0.772   7.459   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       0.044   8.816   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -0.039   6.150   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.578   6.198   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   12                                                  
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   17                                             
CONECT   11   10                                                            
CONECT   12   10    6   13                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   10   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   28                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   19   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₀O₈

Average Mass

410.4630 Da

Monoisotopic Mass

410.19407 Da

IUPAC Name

(3aS,5aR,6R,9aS,9bS)-5a-methyl-3,9-dimethylidene-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dodecahydronaphtho[1,2-b]furan-2-one

Traditional Name

(3aS,5aR,6R,9aS,9bS)-5a-methyl-3,9-dimethylidene-6-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one

CAS Registry Number

Not Available

SMILES

C[C@@]12CC[C@@H]3[C@H](OC(=O)C3=C)[C@H]1C(=C)CC[C@H]2O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C21H30O8/c1-9-4-5-13(28-20-17(25)16(24)15(23)12(8-22)27-20)21(3)7-6-11-10(2)19(26)29-18(11)14(9)21/h11-18,20,22-25H,1-2,4-8H2,3H3/t11-,12+,13+,14+,15+,16-,17+,18-,20-,21-/m0/s1

InChI Key

QSICJOYMTYAQST-FODMJVDISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sonchus asper	LOTUS Database	35616633
Sonchus oleraceus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Eudesmanolides, secoeudesmanolides, and derivatives

Alternative Parents

Substituents

Eudesmanolide
Terpene glycoside
Sesquiterpenoid
Naphthofuran
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Gamma butyrolactone
Monosaccharide
Oxane
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Oxolane
Secondary alcohol
Carboxylic acid ester
Lactone
Oxacycle
Monocarboxylic acid or derivatives
Acetal
Polyol
Carboxylic acid derivative
Organoheterocyclic compound
Alcohol
Primary alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.43	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	125.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	100.05 m³·mol⁻¹	ChemAxon
Polarizability	43.09 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00034267

Chemspider ID

10273217

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13855752

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one (NP0297461)

MOL for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

3D MOL for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

3D SDF for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

3D-SDF for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

PDB for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

3D PDB for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

SMILES for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

INCHI for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

Structure for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)

3D Structure for NP0297461 ((3as,5ar,6r,9as,9bs)-5a-methyl-3,9-dimethylidene-6-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-octahydronaphtho[1,2-b]furan-2-one)