| Record Information |
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| Version | 2.0 |
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| Created at | 2022-09-10 07:35:56 UTC |
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| Updated at | 2022-09-10 07:35:56 UTC |
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| NP-MRD ID | NP0297350 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | rubrenolide |
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| Description | RUBRENOLIDE belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. rubrenolide is found in Sextonia rubra. rubrenolide was first documented in 2005 (PMID: 15612067). Based on a literature review a small amount of articles have been published on RUBRENOLIDE (PMID: 32999145) (PMID: 30760744) (PMID: 29856602) (PMID: 20886871). |
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| Structure | OC[C@H](O)C[C@H]1C[C@@H](CCCCCCCCC=C)OC1=O InChI=1S/C17H30O4/c1-2-3-4-5-6-7-8-9-10-16-12-14(17(20)21-16)11-15(19)13-18/h2,14-16,18-19H,1,3-13H2/t14-,15+,16+/m0/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C17H30O4 |
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| Average Mass | 298.4230 Da |
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| Monoisotopic Mass | 298.21441 Da |
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| IUPAC Name | (3S,5R)-5-(dec-9-en-1-yl)-3-[(2R)-2,3-dihydroxypropyl]oxolan-2-one |
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| Traditional Name | rubrenolide |
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| CAS Registry Number | Not Available |
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| SMILES | OC[C@H](O)C[C@H]1C[C@@H](CCCCCCCCC=C)OC1=O |
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| InChI Identifier | InChI=1S/C17H30O4/c1-2-3-4-5-6-7-8-9-10-16-12-14(17(20)21-16)11-15(19)13-18/h2,14-16,18-19H,1,3-13H2/t14-,15+,16+/m0/s1 |
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| InChI Key | SGQLBAQDXUEXPK-ARFHVFGLSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Lactones |
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| Sub Class | Gamma butyrolactones |
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| Direct Parent | Gamma butyrolactones |
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| Alternative Parents | |
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| Substituents | - Gamma butyrolactone
- Oxolane
- 1,2-diol
- Carboxylic acid ester
- Secondary alcohol
- Carboxylic acid derivative
- Monocarboxylic acid or derivatives
- Oxacycle
- Alcohol
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Primary alcohol
- Aliphatic heteromonocyclic compound
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| Molecular Framework | Aliphatic heteromonocyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Fujioka H: Development of New Innovative Synthetic Organic Chemistry Using Lone Pairs of Oxygen Atoms. Chem Pharm Bull (Tokyo). 2020;68(10):907-945. doi: 10.1248/cpb.c20-00178. [PubMed:32999145 ]
- Fu T, Houel E, Amusant N, Touboul D, Genta-Jouve G, Della-Negra S, Fisher GL, Brunelle A, Duplais C: Biosynthetic investigation of gamma-lactones in Sextonia rubra wood using in situ TOF-SIMS MS/MS imaging to localize and characterize biosynthetic intermediates. Sci Rep. 2019 Feb 13;9(1):1928. doi: 10.1038/s41598-018-37577-5. [PubMed:30760744 ]
- Fu T, Touboul D, Della-Negra S, Houel E, Amusant N, Duplais C, Fisher GL, Brunelle A: Tandem Mass Spectrometry Imaging and in Situ Characterization of Bioactive Wood Metabolites in Amazonian Tree Species Sextonia rubra. Anal Chem. 2018 Jun 19;90(12):7535-7543. doi: 10.1021/acs.analchem.8b01157. Epub 2018 Jun 8. [PubMed:29856602 ]
- Rodrigues AM, Theodoro PN, Eparvier V, Basset C, Silva MR, Beauchene J, Espindola LS, Stien D: Search for antifungal compounds from the wood of durable tropical trees. J Nat Prod. 2010 Oct 22;73(10):1706-7. doi: 10.1021/np1001412. Epub 2010 Oct 1. [PubMed:20886871 ]
- Fujioka H, Ohba Y, Hirose H, Murai K, Kita Y: A double iodoetherification of sigma-symmetric diene acetals for installing four stereogenic centers in a single operation: short asymmetric total synthesis of rubrenolide. Angew Chem Int Ed Engl. 2005 Jan 21;44(5):734-7. doi: 10.1002/anie.200461584. [PubMed:15612067 ]
- LOTUS database [Link]
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