NP-MRD: Showing NP-Card for 5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione (NP0297287)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-10 07:28:40 UTC

Updated at

2022-09-10 07:28:40 UTC

NP-MRD ID

NP0297287

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione

Description

62681-86-1 Belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system. 5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione is found in Lethariella canariensis and Lethariella sernanderi. 62681-86-1 Is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 28 30  0  0  0  0  0  0  0  0999 V2000
    4.6374   -0.8027   -0.0293 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2525   -0.2111   -0.0703 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0560    1.1269   -0.1662 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7384    1.5876   -0.1979 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5735    2.8208   -0.2863 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6843    0.7224   -0.1345 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6082    1.1720   -0.1654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9545    2.4545   -0.2572 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6453    0.2275   -0.0963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3634   -1.1193    0.0002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0486   -1.5479    0.0295 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9855   -0.6395   -0.0369 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2344   -1.0159   -0.0113 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4418   -2.1253    0.0737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1819   -3.3519    0.1616 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8141   -1.6345    0.0400 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7912   -2.4424    0.0992 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0043   -0.1974   -0.0631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0374    0.6746   -0.1269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3268    2.0246   -0.2236 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3869   -0.0643   -0.3402 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6414   -1.7292   -0.6424 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7764   -1.1410    1.0253 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8976    1.7847   -0.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5758    3.3334   -0.3208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1223   -2.6120    0.1058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0436    0.1636   -0.0879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1497    2.5419   -1.0555 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 10 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  2  0
 19 20  1  0
 13  2  1  0
 12  6  1  0
 19  9  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  8 25  1  0
 11 26  1  0
 18 27  1  0
 20 28  1  0
M  END


  Mrv1533004241502152D          

 20 22  0  0  0  0            999 V2000
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  9 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
  6 18  1  0  0  0  0
 18 19  1  0  0  0  0
  2 19  1  0  0  0  0
 10 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0297287

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC(=O)C2=C(O)C3=C(C=C2O1)C(=O)C(=O)C=C3O

> <INCHI_IDENTIFIER>
InChI=1S/C14H8O6/c1-5-2-7(15)12-10(20-5)3-6-11(14(12)19)8(16)4-9(17)13(6)18/h2-4,16,19H,1H3

> <INCHI_KEY>
NPUXQAACUNUHIX-UHFFFAOYSA-N

> <FORMULA>
C14H8O6

> <MOLECULAR_WEIGHT>
272.212

> <EXACT_MASS>
272.032087978

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
25.320154662257682

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5,6-dihydroxy-2-methyl-4H,8H,9H-cyclohexa[g]chromene-4,8,9-trione

> <ALOGPS_LOGP>
1.78

> <JCHEM_LOGP>
1.6974943933333333

> <ALOGPS_LOGS>
-2.83

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.119355244040131

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.682968156903144

> <JCHEM_PKA_STRONGEST_BASIC>
-5.345752597030464

> <JCHEM_POLAR_SURFACE_AREA>
100.9

> <JCHEM_REFRACTIVITY>
71.0874

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.07e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.668  -0.770   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.669  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.669  -4.620   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      12.003  -5.390   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       9.336  -6.930   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.001  -5.390   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   18                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   16                                                  
CONECT   10    9   11   20                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    9   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17    6   19                                                  
CONECT   19   18    2                                                       
CONECT   20   10                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Value	Source
Canarione	MeSH

Chemical Formula

C₁₄H₈O₆

Average Mass

272.2120 Da

Monoisotopic Mass

272.03209 Da

IUPAC Name

5,6-dihydroxy-2-methyl-4H,8H,9H-cyclohexa[g]chromene-4,8,9-trione

Traditional Name

5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione

CAS Registry Number

Not Available

SMILES

CC1=CC(=O)C2=C(O)C3=C(C=C2O1)C(=O)C(=O)C=C3O

InChI Identifier

InChI=1S/C14H8O6/c1-5-2-7(15)12-10(20-5)3-6-11(14(12)19)8(16)4-9(17)13(6)18/h2-4,16,19H,1H3

InChI Key

NPUXQAACUNUHIX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lethariella canariensis	LOTUS Database	35616633
Lethariella sernanderi	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Naphthopyrans

Sub Class

Naphthopyranones

Direct Parent

Naphthopyranones

Alternative Parents

Substituents

Naphthopyranone
Naphthoquinone
Chromone
1-naphthol
Benzopyran
Naphthalene
1-benzopyran
Aryl ketone
Quinone
1-hydroxy-4-unsubstituted benzenoid
Phenol
Pyranone
Benzenoid
Pyran
Vinylogous acid
Heteroaromatic compound
Ketone
Cyclic ketone
Oxacycle
Enol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.78	ALOGPS
logP	1.7	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	4.68	ChemAxon
pKa (Strongest Basic)	-5.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	100.9 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	71.09 m³·mol⁻¹	ChemAxon
Polarizability	25.32 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53483342

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione (NP0297287)

MOL for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

3D MOL for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

3D SDF for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

3D-SDF for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

PDB for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

3D PDB for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

SMILES for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

INCHI for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

Structure for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)

3D Structure for NP0297287 (5,6-dihydroxy-2-methylcyclohexa[g]chromene-4,8,9-trione)