NP-MRD: Showing NP-Card for (2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid (NP0296535)

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Record Information

Version

2.0

Created at

2022-09-10 06:10:14 UTC

Updated at

2022-09-10 06:10:15 UTC

NP-MRD ID

NP0296535

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid

Description

(2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid is found in Clusia nemorosa.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102208102D          

 37 38  0  0  0  0            999 V2000
    1.5909    1.8960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7784    2.0392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.6590    2.4690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9411    3.2442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  2  0  0  0  0
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  2  4  1  0  0  0  0
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 36 37  2  0  0  0  0
 30 37  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309102208102D          

 37 38  0  0  0  0            999 V2000
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    2.9559   -0.5558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 21 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 13 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 33 36  1  0  0  0  0
 36 37  2  0  0  0  0
 30 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0296535

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)C(=O)C1=C(O)C(CC=C(C)C)(CC(C\C=C(\C)C(O)=O)C(C)=C)C2=C(C=CC(C)(C)O2)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C31H42O6/c1-10-20(6)25(32)24-26(33)23-14-15-30(8,9)37-28(23)31(27(24)34,16-13-18(2)3)17-22(19(4)5)12-11-21(7)29(35)36/h11,13-15,20,22,34H,4,10,12,16-17H2,1-3,5-9H3,(H,35,36)/b21-11-

> <INCHI_KEY>
NOXCMVJSVNXOIM-NHDPSOOVSA-N

> <FORMULA>
C31H42O6

> <MOLECULAR_WEIGHT>
510.671

> <EXACT_MASS>
510.298139072

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
56.76307832857606

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxo-5,8-dihydro-2H-chromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid

> <JCHEM_LOGP>
6.486806416333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.642812530913105

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.738962563730553

> <JCHEM_PKA_STRONGEST_BASIC>
-4.88504023084677

> <JCHEM_POLAR_SURFACE_AREA>
100.89999999999999

> <JCHEM_REFRACTIVITY>
151.4655

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2Z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       2.970   3.539   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.453   3.807   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.926   5.254   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.463   2.627   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.053   2.894   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.580   4.341   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.097   4.609   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.623   6.056   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.087   3.429   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -5.603   3.697   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -3.673   1.561   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.990   1.180   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.990   1.180   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.506   0.912   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.496   2.092   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.970   3.539   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.013   1.825   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -2.667  -0.000   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -4.001  -2.310   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       0.000  -4.620   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.528   0.677   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.518  -1.037   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    4   13                                                       
CONECT   13   12   14   19   31                                             
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   13   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   28                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26                                                            
CONECT   28   21   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   37                                                  
CONECT   31   30   13   32                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   35   36                                             
CONECT   34   33                                                            
CONECT   35   33                                                            
CONECT   36   33   37                                                       
CONECT   37   36   30                                                       
MASTER        0    0    0    0    0    0    0    0   37    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₁H₄₂O₆

Average Mass

510.6710 Da

Monoisotopic Mass

510.29814 Da

IUPAC Name

(2Z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxo-5,8-dihydro-2H-chromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid

Traditional Name

(2Z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid

CAS Registry Number

Not Available

SMILES

CCC(C)C(=O)C1=C(O)C(CC=C(C)C)(CC(C\C=C(\C)C(O)=O)C(C)=C)C2=C(C=CC(C)(C)O2)C1=O

InChI Identifier

InChI=1S/C31H42O6/c1-10-20(6)25(32)24-26(33)23-14-15-30(8,9)37-28(23)31(27(24)34,16-13-18(2)3)17-22(19(4)5)12-11-21(7)29(35)36/h11,13-15,20,22,34H,4,10,12,16-17H2,1-3,5-9H3,(H,35,36)/b21-11-

InChI Key

NOXCMVJSVNXOIM-NHDPSOOVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clusia nemorosa	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.49	ChemAxon
pKa (Strongest Acidic)	3.74	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	100.9 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	151.47 m³·mol⁻¹	ChemAxon
Polarizability	56.76 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid (NP0296535)

MOL for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

3D MOL for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

3D SDF for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

3D-SDF for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

PDB for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

3D PDB for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

SMILES for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

INCHI for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

Structure for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)

3D Structure for NP0296535 ((2z)-5-{[7-hydroxy-2,2-dimethyl-8-(3-methylbut-2-en-1-yl)-6-(2-methylbutanoyl)-5-oxochromen-8-yl]methyl}-2,6-dimethylhepta-2,6-dienoic acid)