NP-MRD: Showing NP-Card for (2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one (NP0296277)

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Record Information

Version

2.0

Created at

2022-09-10 05:45:33 UTC

Updated at

2022-09-10 05:45:33 UTC

NP-MRD ID

NP0296277

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one

Description

3-Hydroxy-beta-damascone belongs to the class of organic compounds known as enones. Enones are compounds containing the enone functional group, with the structure RC(=O)CR'. (2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one is found in Nicotiana tabacum, Prunus persica and Vitis vinifera. (2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one was first documented in 2009 (PMID: 19753606). Based on a literature review a small amount of articles have been published on 3-Hydroxy-beta-damascone (PMID: 21702480) (PMID: 35198992) (PMID: 22417331) (PMID: 22097332).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 35  0  0  0  0  0  0  0  0999 V2000
    4.2676    0.0418    0.1762 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3519    1.0884    0.6468 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0238    1.0257    0.5221 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4266   -0.1274   -0.1086 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1285   -1.0592   -0.5309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0355   -0.2279   -0.2688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5142   -1.3241   -0.8486 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3664   -2.4222   -1.3287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9947   -1.5495   -1.0529 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6189   -0.8780    0.1865 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9677   -1.1645    0.2789 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3529    0.5891   -0.0401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9023    0.8844    0.2020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5236    2.1892   -0.5195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7568    1.1525    1.6834 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3184    0.2957    0.4694 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2043   -0.1838   -0.9079 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0354   -0.8968    0.7199 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7740    1.9770    1.1299 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4429    1.8803    0.9237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3228   -3.2444   -1.7154 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0314   -2.1144   -2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8938   -2.9209   -0.4955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3368   -1.0573   -1.9676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2096   -2.6359   -1.0224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0785   -1.2767    1.0647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1960   -1.2613    1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5849    0.8527   -1.0954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9832    1.2125    0.6579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4468    3.0354    0.1765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4244    2.4491   -1.1624 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3723    2.0907   -1.1350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7220    0.8454    2.1886 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0015    0.5063    2.1748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6672    2.2280    1.9314 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 13  6  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  3 20  1  0
  8 21  1  0
  8 22  1  0
  8 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  1
 11 27  1  0
 12 28  1  0
 12 29  1  0
 14 30  1  0
 14 31  1  0
 14 32  1  0
 15 33  1  0
 15 34  1  0
 15 35  1  0
M  END


  Mrv1652309102207452D          

 15 15  0  0  1  0            999 V2000
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3272    1.9659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1018    1.9659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
  6 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0296277

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C/C(=O)C1=C(C)C[C@H](O)CC1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C13H20O2/c1-5-6-11(15)12-9(2)7-10(14)8-13(12,3)4/h5-6,10,14H,7-8H2,1-4H3/b6-5-/t10-/m0/s1

> <INCHI_KEY>
UPRXEFYRIACHQZ-OMMCCPJFSA-N

> <FORMULA>
C13H20O2

> <MOLECULAR_WEIGHT>
208.301

> <EXACT_MASS>
208.146329884

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
24.076681979929408

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2Z)-1-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one

> <JCHEM_LOGP>
2.6568066893333344

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.907051693762668

> <JCHEM_PKA_STRONGEST_BASIC>
-1.0896806254919693

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
63.5693

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2Z)-1-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.611   3.670   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.057   3.670   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   13                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12    6   14   15                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

View in JSmol

Synonyms

Value	Source
3-Hydroxy-b-damascone	Generator
3-Hydroxy-β-damascone	Generator

Chemical Formula

C₁₃H₂₀O₂

Average Mass

208.3010 Da

Monoisotopic Mass

208.14633 Da

IUPAC Name

(2Z)-1-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one

Traditional Name

(2Z)-1-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one

CAS Registry Number

Not Available

SMILES

C\C=C/C(=O)C1=C(C)C[C@H](O)CC1(C)C

InChI Identifier

InChI=1S/C13H20O2/c1-5-6-11(15)12-9(2)7-10(14)8-13(12,3)4/h5-6,10,14H,7-8H2,1-4H3/b6-5-/t10-/m0/s1

InChI Key

UPRXEFYRIACHQZ-OMMCCPJFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nicotiana tabacum	LOTUS Database	35616633
Prunus persica	LOTUS Database	35616633
Vitis vinifera	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as enones. Enones are compounds containing the enone functional group, with the structure RC(=O)CR'.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Enones

Alternative Parents

Substituents

Enone
Acryloyl-group
Secondary alcohol
Ketone
Organic oxide
Hydrocarbon derivative
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.66	ChemAxon
pKa (Strongest Acidic)	18.91	ChemAxon
pKa (Strongest Basic)	-1.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	63.57 m³·mol⁻¹	ChemAxon
Polarizability	24.08 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

98100488

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Garcia CV, Quek SY, Stevenson RJ, Winz RA: Characterization of the bound volatile extract from baby kiwi (Actinidia arguta). J Agric Food Chem. 2011 Aug 10;59(15):8358-65. doi: 10.1021/jf201469c. Epub 2011 Jul 14. [PubMed:21702480 ]
De Rosso M, Lonzarich V, Navarini L, Flamini R: Identification of new glycosidic terpenols and norisoprenoids (aroma precursors) in C. arabica L. green coffee by using a high-resolution mass spectrometry database developed in grape metabolomics. Curr Res Food Sci. 2022 Feb 7;5:336-344. doi: 10.1016/j.crfs.2022.01.026. eCollection 2022. [PubMed:35198992 ]
Petrozziello M, Guaita M, Motta S, Panero L, Bosso A: Analytical and sensory characterization of the aroma of "Langhe D.O.C. Nebbiolo" wines: influence of the prefermentative cold maceration with dry ice. J Food Sci. 2011 May;76(4):C525-34. doi: 10.1111/j.1750-3841.2011.02145.x. [PubMed:22417331 ]
Huang H, Yan M, Piao X: [Isoprenoids and phenylpropanoids from Saussurea deltoidea]. Zhongguo Zhong Yao Za Zhi. 2011 Aug;36(16):2211-4. [PubMed:22097332 ]
Gerhauser C, Klimo K, Hummer W, Holzer J, Petermann A, Garreta-Rufas A, Bohmer FD, Schreier P: Identification of 3-hydroxy-beta-damascone and related carotenoid-derived aroma compounds as novel potent inducers of Nrf2-mediated phase 2 response with concomitant anti-inflammatory activity. Mol Nutr Food Res. 2009 Oct;53(10):1237-44. doi: 10.1002/mnfr.200800492. [PubMed:19753606 ]
LOTUS database [Link]

Showing NP-Card for (2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one (NP0296277)

MOL for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

3D MOL for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

3D SDF for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

3D-SDF for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

PDB for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

3D PDB for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

SMILES for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

INCHI for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

Structure for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)

3D Structure for NP0296277 ((2z)-1-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]but-2-en-1-one)