NP-MRD: Showing NP-Card for 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate (NP0295638)

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Record Information

Version

2.0

Created at

2022-09-10 04:43:56 UTC

Updated at

2022-09-10 04:43:56 UTC

NP-MRD ID

NP0295638

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate

Description

3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate is found in Ainsliaea dissecta, Taraxacum coreanum, Taraxacum disseminatum, Taraxacum formosanum, Taraxacum linearisquameum, Taraxacum obovatum, Taraxacum officinale and Taraxacum platycarpum. 3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171501482D          

 30 32  0  0  0  0            999 V2000
    2.3186   -0.2062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7958    0.4320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.2983    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4589    0.9365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3652    0.9751    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5832    1.7707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3551    2.0620    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1061    2.2240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1447    3.0481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7502    1.7084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5643    1.8420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8556    2.6139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6697    2.7476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1925    2.1093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9012    1.3375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0871    1.2038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9610    3.5194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7751    3.6531    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4382    4.1576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7295    4.9295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2067    5.5677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4980    6.3395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9752    6.9778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1611    6.8441    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3121    6.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6034    7.2451    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8349    5.8350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6490    5.9686    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5436    5.0631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0664    4.4249    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  4  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  4 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  1  0  0  0  0
  2 16  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 20 29  1  0  0  0  0
 29 30  1  0  0  0  0
M  END

     RDKit          3D

 58 60  0  0  0  0  0  0  0  0999 V2000
   -2.6162    2.6977    2.3764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3000    1.7157    1.8247 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6062    1.7884    1.1633 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3089    2.8416    1.1592 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9106    0.5699    0.5808 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0547   -0.3921    1.0953 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6135   -1.4385    0.1542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6619   -1.4574   -1.1427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1255   -2.6879   -1.8568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1908   -0.3942   -2.0016 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2705    0.7852   -2.1975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8479    0.3979   -2.2532 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9522    0.5533   -1.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4515    0.1165   -1.4904 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7961   -0.4126   -2.5735 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4069    0.2601   -0.5324 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7081   -0.1542   -0.7263 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0306   -1.2034    0.1651 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6235   -0.6930    1.3233 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6497   -1.7703    2.3611 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3794   -2.8666    1.9209 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0798   -0.3029    1.0381 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5405    0.6628    1.9009 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0836    0.2128   -0.3959 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1565    1.0647   -0.6243 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7538    0.9166   -0.6051 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9051    1.6339   -1.8126 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2889    1.1705    0.0051 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5996    0.0848    1.0109 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8843    0.3067    1.7564 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6617    2.4822    2.8268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9583    3.7204    2.4059 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6345   -0.9060    1.9258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1795   -2.3318    0.6526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1455   -2.4361   -2.3120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0674   -3.5437   -1.1812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8046   -2.9612   -2.6942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1705   -0.0606   -1.6070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4313   -0.7882   -3.0216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4922    1.6225   -1.5060 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4973    1.2324   -3.2162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5008   -0.0715   -3.1881 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8092   -0.5935   -1.7396 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1031    0.1997    1.6799 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1706   -1.4099    3.2893 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6486   -2.0985    2.6794 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3558   -2.9140    0.9177 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7167   -1.2055    1.0552 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2116    1.2576    1.4830 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1173   -0.6517   -1.0879 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4352    1.0771   -1.5744 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6073    1.5858    0.2492 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7284    2.1933   -1.6600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3982    1.7097    0.3956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    1.9169   -0.1158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7857   -0.0432    1.7483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6809   -0.8875    0.4779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7576   -0.1004    2.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8  7  2  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  2 30  1  0
 30 29  1  0
 29 28  1  0
 28 13  1  0
 13 12  2  0
 12 11  1  0
 11 10  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 19 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 10  8  1  0
 26 17  1  0
 30  6  1  0
  9 35  1  0
  9 36  1  0
  9 37  1  0
  7 34  1  0
  6 33  1  1
  1 31  1  0
  1 32  1  0
 30 58  1  1
 29 56  1  0
 29 57  1  0
 28 54  1  0
 28 55  1  0
 12 42  1  0
 11 40  1  0
 11 41  1  0
 10 38  1  0
 10 39  1  0
 17 43  1  6
 19 44  1  1
 20 45  1  0
 20 46  1  0
 21 47  1  0
 22 48  1  6
 23 49  1  0
 24 50  1  6
 25 51  1  0
 26 52  1  1
 27 53  1  0
M  END


  Mrv1533004171501482D          

 30 32  0  0  0  0            999 V2000
    2.3186   -0.2062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7958    0.4320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.2983    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4589    0.9365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3652    0.9751    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5832    1.7707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3551    2.0620    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1061    2.2240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1447    3.0481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7502    1.7084    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5643    1.8420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8556    2.6139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6697    2.7476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1925    2.1093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9012    1.3375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0871    1.2038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9610    3.5194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7751    3.6531    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4382    4.1576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7295    4.9295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2067    5.5677    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4980    6.3395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9752    6.9778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1611    6.8441    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3121    6.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6034    7.2451    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8349    5.8350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6490    5.9686    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5436    5.0631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0664    4.4249    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  4  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  4 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  4  0  0  0
 15 16  1  0  0  0  0
  2 16  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 20 29  1  0  0  0  0
 29 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0295638

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC2OC(=O)C(=C)C2CCC(=CCC1)C(=O)OC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H28O9/c1-10-4-3-5-12(6-7-13-11(2)19(26)28-14(13)8-10)20(27)30-21-18(25)17(24)16(23)15(9-22)29-21/h5,8,13-18,21-25H,2-4,6-7,9H2,1H3

> <INCHI_KEY>
SIOXYUXOHTZOOM-UHFFFAOYSA-N

> <FORMULA>
C21H28O9

> <MOLECULAR_WEIGHT>
424.446

> <EXACT_MASS>
424.173332482

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
41.939536415995434

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate

> <ALOGPS_LOGP>
-0.02

> <JCHEM_LOGP>
0.9731244856666676

> <ALOGPS_LOGS>
-2.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.194438902169743

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.195723010853209

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810938228982016

> <JCHEM_POLAR_SURFACE_AREA>
142.75000000000003

> <JCHEM_REFRACTIVITY>
104.0948

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.84e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       4.328  -0.385   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.352   0.806   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.832   0.557   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.857   1.748   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -0.682   1.820   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.089   3.305   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.529   3.849   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       0.198   4.151   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.270   5.690   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.400   3.189   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.920   3.438   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.464   4.879   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.983   5.129   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.959   3.937   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.416   2.497   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.896   2.247   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.527   6.570   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       7.047   6.819   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       4.551   7.761   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.095   9.202   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.119  10.393   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       4.663  11.834   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.687  13.025   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.167  12.776   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       6.183  12.083   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.726  13.524   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       7.159  10.892   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       8.678  11.141   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       6.615   9.451   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       7.591   8.260   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8    4   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    2                                                       
CONECT   17   13   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   29                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   20   30                                                  
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Value	Source
3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-2H,3H,3ah,4H,5H,8H,9H,11ah-cyclodeca[b]furan-6-carboxylic acid	Generator

Chemical Formula

C₂₁H₂₈O₉

Average Mass

424.4460 Da

Monoisotopic Mass

424.17333 Da

IUPAC Name

3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate

Traditional Name

3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate

CAS Registry Number

Not Available

SMILES

CC1=CC2OC(=O)C(=C)C2CCC(=CCC1)C(=O)OC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1S/C21H28O9/c1-10-4-3-5-12(6-7-13-11(2)19(26)28-14(13)8-10)20(27)30-21-18(25)17(24)16(23)15(9-22)29-21/h5,8,13-18,21-25H,2-4,6-7,9H2,1H3

InChI Key

SIOXYUXOHTZOOM-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ainsliaea dissecta	LOTUS Database	35616633
Taraxacum coreanum	LOTUS Database	35616633
Taraxacum disseminatum	LOTUS Database	35616633
Taraxacum formosanum	LOTUS Database	35616633
Taraxacum linearisquameum	LOTUS Database	35616633
Taraxacum obovatum	LOTUS Database	35616633
Taraxacum officinale	LOTUS Database	35616633
Taraxacum platycarpum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Germacranolides and derivatives

Alternative Parents

Substituents

Germacranolide
Terpene glycoside
Germacrane sesquiterpenoid
Sesquiterpenoid
Hexose monosaccharide
Dicarboxylic acid or derivatives
Gamma butyrolactone
Monosaccharide
Oxane
Alpha,beta-unsaturated carboxylic ester
Oxolane
Enoate ester
Secondary alcohol
Lactone
Carboxylic acid ester
Polyol
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Acetal
Primary alcohol
Alcohol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.02	ALOGPS
logP	0.97	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	142.75 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	104.09 m³·mol⁻¹	ChemAxon
Polarizability	41.94 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate (NP0295638)

MOL for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D MOL for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D SDF for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D-SDF for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

PDB for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D PDB for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

SMILES for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

INCHI for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

Structure for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D Structure for NP0295638 (3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 10-methyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)