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Record Information
Version2.0
Created at2022-09-10 03:35:32 UTC
Updated at2022-09-10 03:35:32 UTC
NP-MRD IDNP0294860
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,7r,8s,26r,28s,29r,38r)-1,13,14,15,18,19,20,34,35,39,39-undecahydroxy-2,5,10,23,31-pentaoxo-6,9,24,27,30,40-hexaoxaoctacyclo[34.3.1.0⁴,³⁸.0⁷,²⁶.0⁸,²⁹.0¹¹,¹⁶.0¹⁷,²².0³²,³⁷]tetraconta-3,11,13,15,17(22),18,20,32,34,36-decaen-28-yl 3,4,5-trihydroxybenzoate
DescriptionGeraniin belongs to the class of organic compounds known as hydrolyzable tannins. These are tannins with a structure characterized by either of the following models. In model 1, the structure contains galloyl units (in some cases, shikimic acid units) that are linked to diverse polyol carbohydrate-, catechin-, or triterpenoid units. In model 2, contains at least two galloyl units C-C coupled to each other, and do not contain a glycosidically linked catechin unit. (1r,7r,8s,26r,28s,29r,38r)-1,13,14,15,18,19,20,34,35,39,39-undecahydroxy-2,5,10,23,31-pentaoxo-6,9,24,27,30,40-hexaoxaoctacyclo[34.3.1.0⁴,³⁸.0⁷,²⁶.0⁸,²⁹.0¹¹,¹⁶.0¹⁷,²².0³²,³⁷]tetraconta-3,11,13,15,17(22),18,20,32,34,36-decaen-28-yl 3,4,5-trihydroxybenzoate is found in Acer tataricum, Bischofia javanica, Cercidiphyllum japonicum, Elaeocarpus sylvestris, Erodium cicutarium, Euphorbia helioscopia, Euphorbia jolkinii, Euphorbia thymifolia, Euphorbia tirucalli, Excoecaria agallocha, Geranium sibiricum, Heterocentron subtriplinervium, Macaranga tanarius, Mallotus japonicus, Nymphaea tetragona, Phyllanthus amarus, Phyllanthus sellowianus, Phyllanthus urinaria, Spondias mombin, Terminalia catappa and Vernicia fordii. (1r,7r,8s,26r,28s,29r,38r)-1,13,14,15,18,19,20,34,35,39,39-undecahydroxy-2,5,10,23,31-pentaoxo-6,9,24,27,30,40-hexaoxaoctacyclo[34.3.1.0⁴,³⁸.0⁷,²⁶.0⁸,²⁹.0¹¹,¹⁶.0¹⁷,²².0³²,³⁷]tetraconta-3,11,13,15,17(22),18,20,32,34,36-decaen-28-yl 3,4,5-trihydroxybenzoate was first documented in 2022 (PMID: 35967775). Based on a literature review a small amount of articles have been published on Geraniin (PMID: 35630681) (PMID: 35764663) (PMID: 35661848) (PMID: 35646147).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC41H28O27
Average Mass952.6480 Da
Monoisotopic Mass952.08180 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
OC1=CC(=CC(O)=C1O)C(=O)O[C@@H]1O[C@@H]2COC(=O)C3=C(C(O)=C(O)C(O)=C3)C3=C(O)C(O)=C(O)C=C3C(=O)O[C@H]3[C@@H]2OC(=O)C2=CC(=O)[C@]4(O)OC5=C([C@H]2C4(O)O)C(=CC(O)=C5O)C(=O)O[C@@H]13
InChI Identifier
InChI=1S/C41H28O27/c42-13-1-8(2-14(43)24(13)48)34(54)67-39-33-32-30(64-38(58)12-6-19(47)41(61)40(59,60)23(12)22-11(37(57)66-33)5-17(46)27(51)31(22)68-41)18(63-39)7-62-35(55)9-3-15(44)25(49)28(52)20(9)21-10(36(56)65-32)4-16(45)26(50)29(21)53/h1-6,18,23,30,32-33,39,42-46,48-53,59-61H,7H2/t18-,23+,30-,32+,33-,39+,41+/m1/s1
InChI KeyJQQBXPCJFAKSPG-SVYIMCMUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Acer tataricumLOTUS Database
Bischofia javanicaLOTUS Database
Cercidiphyllum japonicumLOTUS Database
Elaeocarpus sylvestrisLOTUS Database
Erodium cicutariumLOTUS Database
Euphorbia helioscopiaLOTUS Database
Euphorbia jolkiniLOTUS Database
Euphorbia thymifoliaLOTUS Database
Euphorbia tirucalliLOTUS Database
Excoecaria agallochaLOTUS Database
Geranium sibiricumLOTUS Database
Heterocentron subtriplinerviumLOTUS Database
Macaranga tanariusLOTUS Database
Mallotus japonicusLOTUS Database
Nymphaea tetragonaLOTUS Database
Phyllanthus amarusLOTUS Database
Phyllanthus sellowianusLOTUS Database
Phyllanthus urinariaLOTUS Database
Spondias mombinLOTUS Database
Terminalia catappaLOTUS Database
Vernicia fordiiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydrolyzable tannins. These are tannins with a structure characterized by either of the following models. In model 1, the structure contains galloyl units (in some cases, shikimic acid units) that are linked to diverse polyol carbohydrate-, catechin-, or triterpenoid units. In model 2, contains at least two galloyl units C-C coupled to each other, and do not contain a glycosidically linked catechin unit.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassTannins
Sub ClassHydrolyzable tannins
Direct ParentHydrolyzable tannins
Alternative Parents
Substituents
  • Hydrolyzable tannin
  • Pentacarboxylic acid or derivatives
  • Macrolide
  • Galloyl ester
  • Gallic acid or derivatives
  • P-hydroxybenzoic acid alkyl ester
  • M-hydroxybenzoic acid ester
  • P-hydroxybenzoic acid ester
  • Dihydroxybenzoic acid
  • Benzopyran
  • 1-benzopyran
  • Chromane
  • Benzoate ester
  • Benzoic acid or derivatives
  • Pyrogallol derivative
  • Benzenetriol
  • Benzoyl
  • 1-hydroxy-2-unsubstituted benzenoid
  • 1-hydroxy-4-unsubstituted benzenoid
  • Phenol
  • Cyclohexenone
  • Benzenoid
  • Monocyclic benzene moiety
  • Monosaccharide
  • Oxane
  • Enoate ester
  • Alpha,beta-unsaturated carboxylic ester
  • Ketone
  • Hemiacetal
  • Lactone
  • Carboxylic acid ester
  • Acetal
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Carbonyl hydrate
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Organooxygen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00002926
Chemspider ID10270376
KEGG Compound IDC10230
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkGeraniin
METLIN IDNot Available
PubChem Compound3001497
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Phan ADT, Zhang J, Seididamyeh M, Srivarathan S, Netzel ME, Sivakumar D, Sultanbawa Y: Hydrolysable tannins, physicochemical properties, and antioxidant property of wild-harvested Terminalia ferdinandiana (exell) fruit at different maturity stages. Front Nutr. 2022 Jul 29;9:961679. doi: 10.3389/fnut.2022.961679. eCollection 2022. [PubMed:35967775 ]
  2. Virtanen V, Green RJ, Karonen M: Interactions between Hydrolysable Tannins and Lipid Vesicles from Escherichia coli with Isothermal Titration Calorimetry. Molecules. 2022 May 17;27(10):3204. doi: 10.3390/molecules27103204. [PubMed:35630681 ]
  3. Boadu A, Agoni C, Karpoormath R, Soliman M, Nlooto M: Repurposing antiviral phytochemicals from the leaf extracts of Spondias mombin (Linn) towards the identification of potential SARSCOV-2 inhibitors. Sci Rep. 2022 Jun 28;12(1):10896. doi: 10.1038/s41598-022-14558-3. [PubMed:35764663 ]
  4. Kubo K, Watanabe H, Kumeta H, Aizawa T, Seki C, Nakano H, Tokuraku K, Uwai K: Chemical analysis of amyloid beta aggregation inhibitors derived from Geranium thunbergii. Bioorg Med Chem. 2022 Aug 15;68:116840. doi: 10.1016/j.bmc.2022.116840. Epub 2022 May 28. [PubMed:35661848 ]
  5. Zhang H, Li Z, Li C, Chen R, Liu T, Jiang Y: Antiviral Effect of Polyphenolic Substances in Geranium wilfordii Maxim against HSV-2 Infection Using in vitro and in silico Approaches. Evid Based Complement Alternat Med. 2022 May 18;2022:7953728. doi: 10.1155/2022/7953728. eCollection 2022. [PubMed:35646147 ]
  6. LOTUS database [Link]