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Record Information
Version2.0
Created at2022-09-10 02:41:04 UTC
Updated at2022-09-10 02:41:04 UTC
NP-MRD IDNP0294240
Secondary Accession NumbersNone
Natural Product Identification
Common Name{[(1r,8s,9s,12s,13r,14s,16s,17r,20s)-20-hydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-3,22-dioxo-2-azabicyclo[16.3.1]docosa-4,6,10,18-tetraen-9-yl]oxy}methanimidic acid
DescriptionHerbimycin G belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. {[(1r,8s,9s,12s,13r,14s,16s,17r,20s)-20-hydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-3,22-dioxo-2-azabicyclo[16.3.1]docosa-4,6,10,18-tetraen-9-yl]oxy}methanimidic acid was first documented in 2018 (PMID: 29849004). Based on a literature review very few articles have been published on Herbimycin G.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H46N2O9
Average Mass578.7030 Da
Monoisotopic Mass578.32033 Da
IUPAC Name{[(1R,8S,9S,12S,13R,14S,16S,17R,20S)-20-hydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-3,22-dioxo-2-azabicyclo[16.3.1]docosa-4,6,10,18-tetraen-9-yl]oxy}methanimidic acid
Traditional Name{[(1R,8S,9S,12S,13R,14S,16S,17R,20S)-20-hydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-3,22-dioxo-2-azabicyclo[16.3.1]docosa-4,6,10,18-tetraen-9-yl]oxy}methanimidic acid
CAS Registry NumberNot Available
SMILES
CO[C@H]1C[C@H](C)[C@@H](OC)C2=C[C@@H](O)C[C@@H](NC(=O)C(C)=CC=C[C@H](OC)[C@@H](OC(O)=N)C(C)=C[C@H](C)[C@H]1OC)C2=O
InChI Identifier
InChI=1S/C30H46N2O9/c1-16-10-9-11-23(37-5)28(41-30(31)36)18(3)12-17(2)27(40-8)24(38-6)13-19(4)26(39-7)21-14-20(33)15-22(25(21)34)32-29(16)35/h9-12,14,17,19-20,22-24,26-28,33H,13,15H2,1-8H3,(H2,31,36)(H,32,35)/t17-,19-,20+,22+,23-,24-,26+,27+,28-/m0/s1
InChI KeyQXJLBJGWHDFICK-NSDNALKQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolactams
Sub ClassNot Available
Direct ParentMacrolactams
Alternative Parents
Substituents
  • Macrolactam
  • Cyclohexenone
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Lactam
  • Ketone
  • Carboxamide group
  • Azacycle
  • Organoheterocyclic compound
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Carboximidic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Imine
  • Carbonyl group
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.17ChemAxon
pKa (Strongest Acidic)-2.9ChemAxon
pKa (Strongest Basic)11.66ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area156.63 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity167.42 m³·mol⁻¹ChemAxon
Polarizability60.68 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139590642
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Buedenbender L, Robertson LP, Lucantoni L, Avery VM, Kurtboke DI, Carroll AR: HSQC-TOCSY Fingerprinting-Directed Discovery of Antiplasmodial Polyketides from the Marine Ascidian-Derived Streptomyces sp. (USC-16018). Mar Drugs. 2018 May 30;16(6). pii: md16060189. doi: 10.3390/md16060189. [PubMed:29849004 ]
  2. LOTUS database [Link]