NP-MRD: Showing NP-Card for 2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid (NP0293260)

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Record Information

Version

1.0

Created at

2022-09-10 01:10:59 UTC

Updated at

2022-09-10 01:10:59 UTC

NP-MRD ID

NP0293260

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid

Description

2-[(8-{[13-(Acetyloxy)-11-hydroxy-2,15-dimethyl-14-(2-oxo-2H-pyran-5-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-5-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(1H-imidazol-5-yl)propanoic acid belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative. 2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid is found in Duttaphrynus melanostictus. 2-[(8-{[13-(Acetyloxy)-11-hydroxy-2,15-dimethyl-14-(2-oxo-2H-pyran-5-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-5-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(1H-imidazol-5-yl)propanoic acid is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241515462D          

 53 58  0  0  0  0            999 V2000
   -6.7091    4.6940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5192    4.5381    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0593    5.1617    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7893    3.7585    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2492    3.1349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4272    3.2053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1063    2.4453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5425    3.0476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3267    2.1752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7031    2.7153    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9235    2.4453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7676    1.6351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9880    1.3651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8321    0.5550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4558    0.0149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2353    0.2849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3912    1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0149    0.5550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1708    1.3651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7944    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5740    1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7299    1.9052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4066    1.4332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4363    2.3314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1963    2.0105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2983    1.1918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0584    0.8709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7163    1.3686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4763    1.0476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6142    2.1872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8542    2.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0526    0.2849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5849    1.6351    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6494    0.5550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0257    1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7538    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3774    1.3651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1570    1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7806    1.6351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5602    1.3651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7161    0.5550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1838    1.9052    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9634    1.6351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5870    2.1752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3666    1.9052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0433    2.3771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7012    1.8794    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.4312    1.0998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6063    1.1158    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.1193    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4957    0.2849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8988    0.5550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  9 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  7 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
  5 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 25 31  1  0  0  0  0
 14 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  2  0  0  0  0
 46 50  1  0  0  0  0
 44 51  1  0  0  0  0
 51 52  2  0  0  0  0
 51 53  1  0  0  0  0
M  END

     RDKit          3D

108113  0  0  0  0  0  0  0  0999 V2000
   -9.2242    5.1736    1.1895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2956    4.0081    1.3498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9010    3.7428    2.5051 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8774    3.2433    0.2906 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0109    2.1580    0.4487 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6872    2.4044   -0.3167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1579    1.0319   -0.2150 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1610    0.7242    1.1770 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8038    0.7199   -0.6479 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4183    0.8574   -2.0618 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8805    0.7366   -2.0542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4460   -0.6161   -1.5944 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0311   -0.5407   -1.2859 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3950    0.1952   -0.0547 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7253   -0.1491    0.2815 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7502    0.7178    0.5183 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4963    1.9502    0.4407 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1290    0.2107    0.8587 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2528   -1.1183    0.1828 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6365   -1.7484    0.4520 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6415   -3.0313   -0.2909 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8341   -3.9127   -0.2434 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1286   -3.3688   -0.7091 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6713   -2.3335    0.1592 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2980   -2.2181    1.3431 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.6450   -1.4433   -0.3650 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.1741   -0.4042    0.5452 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.9081    0.8933   -0.1462 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3441    2.0469    0.6717 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3199    3.3933    0.2644 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7624    4.1137    1.2974 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.0595    3.3049    2.3182 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8033    2.0618    1.9293 N   0  0  0  0  0  0  0  0  0  0  0  0
   11.6453   -0.6823    0.7149 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2049   -1.6304    0.1194 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.3693   -2.7408   -0.8638 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5623   -0.7358   -0.2232 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6656   -1.6293   -0.7513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0482   -1.1804   -0.2715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2566    0.1972   -0.8003 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3166    0.2300   -2.3048 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4866    0.9171   -0.2664 C   0  0  1  0  0  0  0  0  0  0  0  0
   -8.4278    0.0721    0.4411 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5616   -0.3840   -0.2428 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5010   -1.1949    0.3274 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3044   -1.5756    1.6538 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1598   -2.3228    2.1973 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2484   -1.1487    2.2858 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2677    0.1645    1.9564 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4941   -1.8144    0.5413 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.5212   -2.6213   -0.2297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0372   -1.1982    0.8161 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.4127    0.3101   -2.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0096   -0.7147   -2.7957 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0468    1.3456   -1.1627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7100   -0.0778   -1.2922 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.4933   -0.0475    2.3115 H   0  0  0  0  0  0  0  0  0  0  0  0
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 43100  1  0
 43101  1  0
 45102  1  0
 45103  1  0
 45104  1  0
 46105  1  6
 53108  1  0
 49107  1  0
 48106  1  0
 18 70  1  0
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 26 82  1  0
 27 83  1  1
 28 84  1  0
 28 85  1  0
 30 86  1  0
 31 87  1  0
 32 88  1  0
 36 89  1  0
M  END


  Mrv1533004241515462D          

 53 58  0  0  0  0            999 V2000
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   -7.4363    2.3314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1963    2.0105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2983    1.1918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0584    0.8709    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7163    1.3686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4763    1.0476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6142    2.1872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8542    2.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0526    0.2849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5849    1.6351    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6494    0.5550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0257    1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7538    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3774    1.3651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1570    1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7806    1.6351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5602    1.3651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7161    0.5550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1838    1.9052    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9634    1.6351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5870    2.1752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3666    1.9052    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0433    2.3771    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7012    1.8794    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.4312    1.0998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6063    1.1158    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.1193    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4957    0.2849    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8988    0.5550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  9 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  7 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
  5 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 25 31  1  0  0  0  0
 14 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  2  0  0  0  0
 46 50  1  0  0  0  0
 44 51  1  0  0  0  0
 51 52  2  0  0  0  0
 51 53  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0293260

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)OC1CC2(O)C3CCC4CC(CCC4(C)C3CCC2(C)C1C1=COC(=O)C=C1)OC(=O)CCCCCCC(=O)NC(CC1=CNC=N1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C40H55N3O10/c1-24(44)52-32-20-40(50)30-12-11-26-18-28(14-16-38(26,2)29(30)15-17-39(40,3)36(32)25-10-13-34(46)51-22-25)53-35(47)9-7-5-4-6-8-33(45)43-31(37(48)49)19-27-21-41-23-42-27/h10,13,21-23,26,28-32,36,50H,4-9,11-12,14-20H2,1-3H3,(H,41,42)(H,43,45)(H,48,49)

> <INCHI_KEY>
WANWQPCJXGSVEB-UHFFFAOYSA-N

> <FORMULA>
C40H55N3O10

> <MOLECULAR_WEIGHT>
737.891

> <EXACT_MASS>
737.388744983

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
108

> <JCHEM_AVERAGE_POLARIZABILITY>
80.42583670705346

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(8-{[13-(acetyloxy)-11-hydroxy-2,15-dimethyl-14-(2-oxo-2H-pyran-5-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-8-oxooctanamido)-3-(1H-imidazol-4-yl)propanoic acid

> <ALOGPS_LOGP>
4.09

> <JCHEM_LOGP>
2.142735693747352

> <ALOGPS_LOGS>
-5.57

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.957006438853064

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.7548233636261976

> <JCHEM_PKA_STRONGEST_BASIC>
6.552068975913517

> <JCHEM_POLAR_SURFACE_AREA>
194.21

> <JCHEM_REFRACTIVITY>
191.93130000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.96e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(8-{[13-(acetyloxy)-11-hydroxy-2,15-dimethyl-14-(6-oxopyran-3-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-8-oxooctanamido)-3-(1H-imidazol-4-yl)propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0     -12.524   8.762   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -14.036   8.471   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0     -15.044   9.635   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0     -14.540   7.016   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0     -13.532   5.852   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -11.997   5.983   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -11.398   4.564   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0     -10.346   5.689   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -9.943   4.060   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -8.779   5.069   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -7.324   4.564   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -7.033   3.052   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.578   2.548   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -5.287   1.036   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -6.451   0.028   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -7.906   0.532   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -8.197   2.044   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -9.361   1.036   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -9.652   2.548   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -10.816   1.540   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -12.271   2.044   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -12.562   3.556   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -13.826   2.675   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -13.881   4.352   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -15.300   3.753   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -15.490   2.225   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0     -16.909   1.626   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0     -18.137   2.555   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0     -19.556   1.956   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0     -17.947   4.083   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -16.528   4.682   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -3.831   0.532   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -2.958   3.052   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -1.212   1.036   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -0.048   2.044   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       1.407   1.540   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       2.571   2.548   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       4.026   2.044   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.191   3.052   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.646   2.548   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0       6.937   1.036   0.000  0.00  0.00           O+0
HETATM   43  N   UNK     0       7.810   3.556   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0       9.265   3.052   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      10.429   4.060   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      11.884   3.556   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      13.147   4.437   0.000  0.00  0.00           C+0
HETATM   48  N   UNK     0      14.376   3.508   0.000  0.00  0.00           N+0
HETATM   49  C   UNK     0      13.871   2.053   0.000  0.00  0.00           C+0
HETATM   50  N   UNK     0      12.332   2.083   0.000  0.00  0.00           N+0
HETATM   51  C   UNK     0       9.556   1.540   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0       8.392   0.532   0.000  0.00  0.00           O+0
HETATM   53  O   UNK     0      11.011   1.036   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   24                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9   22                                             
CONECT    8    7                                                            
CONECT    9    7   10   19                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   32                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   12   18   19                                             
CONECT   18   17                                                            
CONECT   19   17    9   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21    7   23   24                                             
CONECT   23   22                                                            
CONECT   24   22    5   25                                                  
CONECT   25   24   26   31                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   25                                                       
CONECT   32   14   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44                                                       
CONECT   44   43   45   51                                                  
CONECT   45   44   46                                                       
CONECT   46   45   47   50                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   46                                                       
CONECT   51   44   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  116    0
END

View in JSmol

Synonyms

Value	Source
2-[(8-{[13-(acetyloxy)-11-hydroxy-2,15-dimethyl-14-(2-oxo-2H-pyran-5-yl)tetracyclo[8.7.0.0,.0,]heptadecan-5-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(1H-imidazol-5-yl)propanoate	Generator
2-[(8-{[13-(acetyloxy)-11-hydroxy-2,15-dimethyl-14-(2-oxo-2H-pyran-5-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(1H-imidazol-5-yl)propanoate	Generator

Chemical Formula

C₄₀H₅₅N₃O₁₀

Average Mass

737.8910 Da

Monoisotopic Mass

737.38874 Da

IUPAC Name

2-(8-{[13-(acetyloxy)-11-hydroxy-2,15-dimethyl-14-(2-oxo-2H-pyran-5-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-8-oxooctanamido)-3-(1H-imidazol-4-yl)propanoic acid

Traditional Name

2-(8-{[13-(acetyloxy)-11-hydroxy-2,15-dimethyl-14-(6-oxopyran-3-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-8-oxooctanamido)-3-(1H-imidazol-4-yl)propanoic acid

CAS Registry Number

Not Available

SMILES

CC(=O)OC1CC2(O)C3CCC4CC(CCC4(C)C3CCC2(C)C1C1=COC(=O)C=C1)OC(=O)CCCCCCC(=O)NC(CC1=CNC=N1)C(O)=O

InChI Identifier

InChI=1S/C40H55N3O10/c1-24(44)52-32-20-40(50)30-12-11-26-18-28(14-16-38(26,2)29(30)15-17-39(40,3)36(32)25-10-13-34(46)51-22-25)53-35(47)9-7-5-4-6-8-33(45)43-31(37(48)49)19-27-21-41-23-42-27/h10,13,21-23,26,28-32,36,50H,4-9,11-12,14-20H2,1-3H3,(H,41,42)(H,43,45)(H,48,49)

InChI Key

WANWQPCJXGSVEB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Duttaphrynus melanostictus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid lactones

Direct Parent

Bufanolides and derivatives

Alternative Parents

Substituents

Bufanolide-skeleton
Steroid ester
Hydroxysteroid
14-hydroxysteroid
Histidine or derivatives
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Alpha-amino acid or derivatives
Tricarboxylic acid or derivatives
Imidazolyl carboxylic acid derivative
Pyranone
Fatty acyl
Pyran
N-acyl-amine
Fatty amide
Cyclic alcohol
Tertiary alcohol
Heteroaromatic compound
Imidazole
Azole
Secondary carboxylic acid amide
Carboxylic acid ester
Carboxamide group
Lactone
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Hydrocarbon derivative
Alcohol
Organic oxide
Carbonyl group
Organic oxygen compound
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.09	ALOGPS
logP	2.14	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	3.75	ChemAxon
pKa (Strongest Basic)	6.55	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	194.21 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	191.93 m³·mol⁻¹	ChemAxon
Polarizability	80.43 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid (NP0293260)

MOL for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

3D MOL for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

3D SDF for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

3D-SDF for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

PDB for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

3D PDB for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

SMILES for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

INCHI for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

Structure for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)

3D Structure for NP0293260 (2-[(8-{[2-(acetyloxy)-3a-hydroxy-9a,11a-dimethyl-1-(6-oxopyran-3-yl)-tetradecahydrocyclopenta[a]phenanthren-7-yl]oxy}-1-hydroxy-8-oxooctylidene)amino]-3-(3h-imidazol-4-yl)propanoic acid)