NP-MRD: Showing NP-Card for (1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol (NP0292809)

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Record Information

Version

2.0

Created at

2022-09-10 00:30:55 UTC

Updated at

2022-09-10 00:30:55 UTC

NP-MRD ID

NP0292809

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol

Description

Echinasteroside c belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. Thus, echinasteroside c is considered to be a steroid conjugate. (1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol is found in Distolasterias nipon, Echinaster brasiliensis and Linckia laevigata. Based on a literature review very few articles have been published on Echinasteroside c.

Structure

MOL 3D MOL SDF PDB SMILES InChI

  Mrv1652309102202302D          

 43 47  0  0  1  0            999 V2000
   -8.1062    3.0252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3611    2.2406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.8710    0.6714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0640    0.8429    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
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  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
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  3 42  1  0  0  0  0
 42 43  1  6  0  0  0
M  END

     RDKit          3D

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 23 68  1  0
 23 69  1  0
 24 70  1  0
 24 71  1  0
 25 72  1  6
 26 73  1  0
 26 74  1  0
 26 75  1  0
 27 76  1  0
 27 77  1  0
 28 78  1  0
 17 59  1  6
 18 60  1  0
 15 57  1  1
 16 58  1  0
 14 56  1  6
 13 55  1  0
 11 53  1  0
 11 54  1  0
  9 51  1  6
 10 52  1  0
  7 50  1  0
 39 94  1  0
 39 95  1  0
 40 96  1  1
 41 97  1  0
 42 98  1  6
 43 99  1  0
M  END

  Mrv1652309102202302D          

 43 47  0  0  1  0            999 V2000
   -8.1062    3.0252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3611    2.2406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1681    2.0691    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -9.4230    1.2845    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.8710    0.6714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0640    0.8429    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.8091    1.6275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0021    1.7990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7472    2.5837    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.2992    3.1968    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9402    2.7552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3882    2.1421    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.1332    2.9267    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5812    2.3136    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1687    3.0281    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5042    3.7818    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3617    2.8566    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7486    3.4086    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2755    2.0361    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5610    1.6236    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5610    0.7986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8465    2.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1321    1.6236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4176    2.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2969    1.6236    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2969    0.7986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0114    2.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7258    1.6236    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0291    1.7005    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4161    1.1485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2841    0.9159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0911    0.7444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6431    1.3575    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4501    1.1859    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.8980    0.5729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7050    0.4013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5120    0.2298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2300    1.1129    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7820    1.7260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5271    2.5107    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.0791    3.1237    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7201    2.6822    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.4652    3.4668    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 19 29  1  0  0  0  0
 14 29  1  0  0  0  0
 29 30  1  6  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 33 32  1  6  0  0  0
 12 33  1  0  0  0  0
 33 34  1  0  0  0  0
  8 34  1  0  0  0  0
 34 35  1  6  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
  6 37  1  0  0  0  0
  4 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  1  0  0  0
 40 42  1  0  0  0  0
  3 42  1  0  0  0  0
 42 43  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0292809

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H]1[C@H](O[C@H]2CC[C@]3(C)[C@H]4CC[C@]5(C)[C@@H]([C@H](C)CCC[C@H](C)CO)[C@@H](O)[C@H](O)[C@H]5[C@]4(O)C[C@@H](O)C3=C2)OC[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C33H56O10/c1-17(15-34)7-6-8-18(2)24-26(38)27(39)29-32(24,4)12-10-23-31(3)11-9-19(13-20(31)21(35)14-33(23,29)40)43-30-28(41-5)25(37)22(36)16-42-30/h13,17-19,21-30,34-40H,6-12,14-16H2,1-5H3/t17-,18+,19-,21+,22+,23+,24-,25-,26+,27-,28+,29+,30-,31-,32+,33-/m0/s1

> <INCHI_KEY>
NHMQTYHFQPGJFK-KGFVJONFSA-N

> <FORMULA>
C33H56O10

> <MOLECULAR_WEIGHT>
612.801

> <EXACT_MASS>
612.387348003

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
99

> <JCHEM_AVERAGE_POLARIZABILITY>
69.8884788784286

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,5S,8R,10S,11S,12R,13R,14R,15R)-5-{[(2S,3R,4S,5R)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-14-[(2R,6S)-7-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-ene-8,10,12,13-tetrol

> <JCHEM_LOGP>
0.6076808889999997

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.458510824500394

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.733854907691747

> <JCHEM_PKA_STRONGEST_BASIC>
-1.7394378045775385

> <JCHEM_POLAR_SURFACE_AREA>
169.29999999999998

> <JCHEM_REFRACTIVITY>
159.37140000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5S,8R,10S,11S,12R,13R,14R,15R)-5-{[(2S,3R,4S,5R)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-14-[(2R,6S)-7-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-ene-8,10,12,13-tetrol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0     -15.132   5.647   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0     -15.607   4.182   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0     -17.114   3.862   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -17.590   2.398   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0     -16.559   1.253   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0     -15.053   1.573   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -14.577   3.038   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -13.071   3.358   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -12.595   4.823   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0     -13.625   5.967   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0     -11.088   5.143   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -10.058   3.999   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -9.582   5.463   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -8.552   4.319   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -7.782   5.652   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -8.408   7.059   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -6.275   5.332   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -5.131   6.363   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -6.114   3.801   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.781   3.031   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.781   1.491   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.447   3.801   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.113   3.031   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.780   3.801   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.554   3.031   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.554   1.491   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.888   3.801   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       3.222   3.031   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -7.521   3.174   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -6.377   2.144   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -7.997   1.710   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -9.503   1.390   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -10.534   2.534   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -12.040   2.214   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -11.010   1.069   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -12.516   0.749   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -14.022   0.429   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0     -19.096   2.077   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0     -20.126   3.222   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -19.651   4.687   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0     -20.681   5.831   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0     -18.144   5.007   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0     -17.668   6.471   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   42                                                  
CONECT    4    3    5   38                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   37                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   34                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14   33                                             
CONECT   13   12                                                            
CONECT   14   12   15   29                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   29                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27                                                            
CONECT   29   19   14   30   31                                             
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   12   34                                                  
CONECT   34   33    8   35   36                                             
CONECT   35   34                                                            
CONECT   36   34   37                                                       
CONECT   37   36    6                                                       
CONECT   38    4   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40    3   43                                                  
CONECT   43   42                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   94    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₅₆O₁₀

Average Mass

612.8010 Da

Monoisotopic Mass

612.38735 Da

IUPAC Name

(1R,2R,5S,8R,10S,11S,12R,13R,14R,15R)-5-{[(2S,3R,4S,5R)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-14-[(2R,6S)-7-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-ene-8,10,12,13-tetrol

Traditional Name

CAS Registry Number

Not Available

SMILES

CO[C@H]1[C@H](O[C@H]2CC[C@]3(C)[C@H]4CC[C@]5(C)[C@@H]([C@H](C)CCC[C@H](C)CO)[C@@H](O)[C@H](O)[C@H]5[C@]4(O)C[C@@H](O)C3=C2)OC[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C33H56O10/c1-17(15-34)7-6-8-18(2)24-26(38)27(39)29-32(24,4)12-10-23-31(3)11-9-19(13-20(31)21(35)14-33(23,29)40)43-30-28(41-5)25(37)22(36)16-42-30/h13,17-19,21-30,34-40H,6-12,14-16H2,1-5H3/t17-,18+,19-,21+,22+,23+,24-,25-,26+,27-,28+,29+,30-,31-,32+,33-/m0/s1

InChI Key

NHMQTYHFQPGJFK-KGFVJONFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Distolasterias nipon	LOTUS Database	35616633
Echinaster brasiliensis	LOTUS Database	35616633
Linckia laevigata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal glycosides

Alternative Parents

Substituents

Tetrahydroxy bile acid, alcohol, or derivatives
26-hydroxysteroid
Steroidal glycoside
Hydroxy bile acid, alcohol, or derivatives
Bile acid, alcohol, or derivatives
6-hydroxysteroid
15-hydroxysteroid
16-hydroxysteroid
16-beta-hydroxysteroid
Hydroxysteroid
Delta-4-steroid
Glycosyl compound
O-glycosyl compound
Fatty alcohol
Oxane
Fatty acyl
Monosaccharide
Cyclic alcohol
Tertiary alcohol
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Acetal
Ether
Dialkyl ether
Polyol
Alcohol
Organooxygen compound
Hydrocarbon derivative
Primary alcohol
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.61	ChemAxon
pKa (Strongest Acidic)	12.73	ChemAxon
pKa (Strongest Basic)	-1.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	169.3 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	159.37 m³·mol⁻¹	ChemAxon
Polarizability	69.89 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29216386

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15764974

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol (NP0292809)

MOL for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

3D MOL for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

3D SDF for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

3D-SDF for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

PDB for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

3D PDB for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

SMILES for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

INCHI for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

Structure for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)

3D Structure for NP0292809 ((1r,2r,3r,3as,3bs,5r,7s,9ar,9br,11ar)-7-{[(2s,3r,4s,5r)-4,5-dihydroxy-3-methoxyoxan-2-yl]oxy}-1-[(2r,6s)-7-hydroxy-6-methylheptan-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthrene-2,3,3b,5-tetrol)