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Record Information
Version2.0
Created at2022-09-09 23:37:28 UTC
Updated at2022-09-09 23:37:28 UTC
NP-MRD IDNP0292202
Secondary Accession NumbersNone
Natural Product Identification
Common Name{[(4e,6e,8s,9s,10e,12s,13r,14s,16s,17r)-3-hydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-20,22-dioxo-2-azabicyclo[16.3.1]docosa-1(21),2,4,6,10,18-hexaen-9-yl]oxy}methanimidic acid
DescriptionHerbimycin a belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. {[(4e,6e,8s,9s,10e,12s,13r,14s,16s,17r)-3-hydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-20,22-dioxo-2-azabicyclo[16.3.1]docosa-1(21),2,4,6,10,18-hexaen-9-yl]oxy}methanimidic acid was first documented in 2014 (PMID: 25446094). Based on a literature review a significant number of articles have been published on herbimycin a (PMID: 26187180) (PMID: 31120191) (PMID: 30343052) (PMID: 30221721) (PMID: 30093405) (PMID: 28222358).
Structure
Thumb
Synonyms
ValueSource
HerbimycinMeSH
Chemical FormulaC30H42N2O9
Average Mass574.6710 Da
Monoisotopic Mass574.28903 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
CO[C@H]1C[C@H](C)[C@@H](OC)C2=CC(=O)C=C(N=C(O)\C(C)=C\C=C\[C@H](OC)[C@@H](OC(O)=N)\C(C)=C\[C@H](C)[C@H]1OC)C2=O
InChI Identifier
InChI=1S/C30H42N2O9/c1-16-10-9-11-23(37-5)28(41-30(31)36)18(3)12-17(2)27(40-8)24(38-6)13-19(4)26(39-7)21-14-20(33)15-22(25(21)34)32-29(16)35/h9-12,14-15,17,19,23-24,26-28H,13H2,1-8H3,(H2,31,36)(H,32,35)/b11-9+,16-10+,18-12+/t17-,19-,23-,24-,26+,27+,28-/m0/s1
InChI KeyMCAHMSDENAOJFZ-GDYSMBPZSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolactams
Sub ClassNot Available
Direct ParentMacrolactams
Alternative Parents
Substituents
  • Macrolactam
  • Carbamic acid ester
  • Vinylogous amide
  • Carboxamide group
  • Ketone
  • Lactam
  • Carbonic acid derivative
  • Secondary carboxylic acid amide
  • Cyclic ketone
  • Carboxylic acid derivative
  • Dialkyl ether
  • Ether
  • Azacycle
  • Organoheterocyclic compound
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4470632
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound6436247
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yamaori S, Kinugasa Y, Jiang R, Takeda S, Yamamoto I, Watanabe K: Cannabidiol induces expression of human cytochrome P450 1A1 that is possibly mediated through aryl hydrocarbon receptor signaling in HepG2 cells. Life Sci. 2015 Sep 1;136:87-93. doi: 10.1016/j.lfs.2015.07.007. Epub 2015 Jul 15. [PubMed:26187180 ]
  2. Kim SH, Kang JG, Kim CS, Ihm SH, Choi MG, Yoo HJ, Lee SJ: Herbimycin A inhibits cell growth with reversal of epithelial-mesenchymal transition in anaplastic thyroid carcinoma cells. Biochem Biophys Res Commun. 2014 Dec 12;455(3-4):363-70. doi: 10.1016/j.bbrc.2014.11.018. Epub 2014 Nov 15. [PubMed:25446094 ]
  3. Liang S, Lin X, Liang Y, Song D, Zhang L, Fan X: Killing Effects of IFN R(-/-) Mouse NK Cells Activated by HN Protein of NDV on Mouse Hepatoma Cells and Possible Mechanism with Syk and NF-kappaB. Anat Rec (Hoboken). 2019 Oct;302(10):1718-1725. doi: 10.1002/ar.24177. Epub 2019 Jun 12. [PubMed:31120191 ]
  4. D'Andrea P, Sciancalepore M, Veltruska K, Lorenzon P, Bandiera A: Epidermal Growth Factor - based adhesion substrates elicit myoblast scattering, proliferation, differentiation and promote satellite cell myogenic activation. Biochim Biophys Acta Mol Cell Res. 2019 Mar;1866(3):504-517. doi: 10.1016/j.bbamcr.2018.10.012. Epub 2018 Oct 18. [PubMed:30343052 ]
  5. Zhang G, Gui S, Wang W, Meng D, Meng Q, Luan H, Zhao R, Zhang J, Sui H: Acute stimulatory effect of tumor necrosis factor on the basolateral 50 pS K channels in the thick ascending limb of the rat kidney. Mol Med Rep. 2018 Nov;18(5):4733-4738. doi: 10.3892/mmr.2018.9475. Epub 2018 Sep 10. [PubMed:30221721 ]
  6. Nakazono A, Adachi N, Takahashi H, Seki T, Hamada D, Ueyama T, Sakai N, Saito N: Pharmacological induction of heat shock proteins ameliorates toxicity of mutant PKCgamma in spinocerebellar ataxia type 14. J Biol Chem. 2018 Sep 21;293(38):14758-14774. doi: 10.1074/jbc.RA118.002913. Epub 2018 Aug 9. [PubMed:30093405 ]
  7. El-Shazly AE, Roncarati P, Lejeune M, Lefebvre PP, Delvenne P: Tyrosine kinase inhibition is an important factor for gene expression of CRTH2 in human eosinophils and lymphocytes: A novel mechanism for explaining eosinophils recruitment by the neuro-immune axis in allergic rhinitis. Int Immunopharmacol. 2017 Apr;45:180-186. doi: 10.1016/j.intimp.2017.02.015. Epub 2017 Feb 20. [PubMed:28222358 ]
  8. Osterroos A, Kashif M, Haglund C, Blom K, Hoglund M, Andersson C, Gustafsson MG, Eriksson A, Larsson R: Combination screening in vitro identifies synergistically acting KP372-1 and cytarabine against acute myeloid leukemia. Biochem Pharmacol. 2016 Oct 15;118:40-49. doi: 10.1016/j.bcp.2016.08.020. Epub 2016 Aug 24. [PubMed:27565890 ]
  9. Zhang Z, Xue N, Bian C, Yan R, Jin L, Chen X, Yu X: C15-methoxyphenylated 18-deoxy-herbimycin A analogues, their in vitro anticancer activity and heat shock protein 90 binding affinity. Bioorg Med Chem Lett. 2016 Sep 1;26(17):4287-91. doi: 10.1016/j.bmcl.2016.07.040. Epub 2016 Jul 20. [PubMed:27476419 ]
  10. An YW, Jhang KA, Woo SY, Kang JL, Chong YH: Sulforaphane exerts its anti-inflammatory effect against amyloid-beta peptide via STAT-1 dephosphorylation and activation of Nrf2/HO-1 cascade in human THP-1 macrophages. Neurobiol Aging. 2016 Feb;38:1-10. doi: 10.1016/j.neurobiolaging.2015.10.016. Epub 2015 Oct 23. [PubMed:26827637 ]
  11. Akiyama M, Yamada O, Akita S, Urashima M, Horiguchi-Yamada J, Ohno T, Mizoguchi H, Eto Y, Yamada H: Ectopic expression of c-myc fails to overcome downregulation of telomerase activity induced by herbimycin A, but ectopic hTERT expression overcomes it. Leukemia. 2015 Nov;29(11):2274. doi: 10.1038/leu.2015.266. [PubMed:26531889 ]
  12. Kim SH, Kang JG, Kim CS, Ihm SH, Choi MG, Yoo HJ, Lee SJ: 17-Allylamino-17-demethoxygeldanamycin and Herbimycin A Induce Cell Death by Modulating beta-Catenin and PI3K/AKT Signaling in FRO Anaplastic Thyroid Carcinoma Cells. Anticancer Res. 2015 Oct;35(10):5453-60. [PubMed:26408708 ]
  13. Lin J, Xu Y, Zhao T, Sun L, Yang M, Liu T, Sun H, Zhang L: Genistein suppresses smooth muscle cell-derived foam cell formation through tyrosine kinase pathway. Biochem Biophys Res Commun. 2015 Aug 7;463(4):1297-304. doi: 10.1016/j.bbrc.2015.04.155. Epub 2015 Jun 18. [PubMed:26093297 ]
  14. Eberwein P, Laird D, Schulz S, Reinhard T, Steinberg T, Tomakidi P: Modulation of focal adhesion constituents and their down-stream events by EGF: On the cross-talk of integrins and growth factor receptors. Biochim Biophys Acta. 2015 Oct;1853(10 Pt A):2183-98. doi: 10.1016/j.bbamcr.2015.06.004. Epub 2015 Jun 14. [PubMed:26079101 ]
  15. Shin DH, Lee MJ, Jiao HY, Choi S, Kim MW, Park CG, Na J, Kim SW, Park IK, So I, Jun JY: Regulatory Roles of Endogenous Mitogen-Activated Protein Kinases and Tyrosine Kinases in the Pacemaker Activity of Colonic Interstitial Cells of Cajal. Pharmacology. 2015;96(1-2):16-24. doi: 10.1159/000430990. Epub 2015 May 30. [PubMed:26043726 ]
  16. Kim SH, Kang JG, Kim CS, Ihm SH, Choi MG, Yoo HJ, Lee SJ: Novel heat shock protein 90 inhibitor NVP-AUY922 synergizes with the histone deacetylase inhibitor PXD101 in induction of death of anaplastic thyroid carcinoma cells. J Clin Endocrinol Metab. 2015 Feb;100(2):E253-61. doi: 10.1210/jc.2014-3101. Epub 2014 Nov 12. [PubMed:25389633 ]
  17. LOTUS database [Link]