NP-MRD: Showing NP-Card for [(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate (NP0292085)

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Record Information

Version

2.0

Created at

2022-09-09 23:26:53 UTC

Updated at

2022-09-09 23:26:53 UTC

NP-MRD ID

NP0292085

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate

Description

16:0-Glc-stigmasterol belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24. Thus, 16:0-GLC-stigmasterol is considered to be a sterol. [(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate is found in Labisia pumila. Based on a literature review very few articles have been published on 16:0-Glc-stigmasterol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

  Mrv1652309102201262D          

 58 62  0  0  1  0            999 V2000
  -10.7171  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000  -13.2000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -14.4375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434  -14.4375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579  -14.0250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -14.4375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2868  -14.0250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -14.4375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158  -14.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -15.2625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.1447  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158  -15.6750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158  -16.5000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -16.9125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447  -16.5000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.1447  -15.6750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.8592  -15.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737  -15.6750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737  -16.5000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.3273  -16.1644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592  -16.9125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.0307  -17.7195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8512  -17.8057    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1867  -17.0520    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.9937  -16.8805    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.5458  -17.4936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2487  -16.0959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0556  -15.9244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3106  -15.1397    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.1175  -14.9682    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3725  -14.1836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7585  -14.5266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0135  -13.7420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9516  -14.6982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -15.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -15.2625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2868  -15.6750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579  -15.6750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579  -16.5000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434  -15.2625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289  -15.6750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 20 19  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 24 23  1  1  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 32 31  1  6  0  0  0
 32 33  1  0  0  0  0
 27 33  1  0  0  0  0
 33 34  1  1  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  1  0  0  0
 36 38  1  0  0  0  0
 32 38  1  0  0  0  0
 38 39  1  1  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 36 41  1  0  0  0  0
 41 42  1  1  0  0  0
 42 43  1  1  0  0  0
 42 44  1  0  0  0  0
 44 45  2  0  0  0  0
 46 45  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 46 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  1  0  0  0  0
 29 52  1  0  0  0  0
 24 52  1  0  0  0  0
 22 53  1  0  0  0  0
 53 54  1  6  0  0  0
 53 55  1  0  0  0  0
 55 56  1  1  0  0  0
 55 57  1  0  0  0  0
 20 57  1  0  0  0  0
 57 58  1  6  0  0  0
M  END

     RDKit          3D

146150  0  0  0  0  0  0  0  0999 V2000
   17.0525    3.0999    0.8899 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5822    3.2024    1.2781 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6826    3.1746    0.0570 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2689    3.2775    0.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2725    3.2590   -0.6038 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3470    2.0067   -1.4245 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0794    0.7455   -0.5818 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7088    0.8232    0.0298 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4338   -0.3736    0.8643 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4604   -1.6841    0.1520 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4828   -1.7809   -0.9568 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0502   -1.5794   -0.7207 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3146   -2.4738    0.1897 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6291   -2.5171    1.6278 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6732   -3.5627    2.2553 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2574   -3.1883    2.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6630   -2.4845    2.9530 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5055   -3.5591    0.9829 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1404   -3.2240    0.7954 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7002   -3.7892   -0.5364 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3844   -3.5873   -0.8242 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0086   -2.2883   -1.1397 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7229   -1.5521    0.0074 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6203   -1.3558    0.1046 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2222   -1.9257    1.3728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7219   -1.9522    1.1609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2474   -0.5593    1.0841 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3941   -0.0464    2.5197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3721    0.3780    0.3346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8794    1.4898   -0.1546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2915    1.9098   -0.0240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1797    0.8851    0.6436 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6001   -0.4999    0.4306 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5035   -1.6077    0.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8331   -1.4951    0.0974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4675   -0.1777    0.5241 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6244   -0.1863    1.9998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4951    0.8658    0.0087 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.3153    2.1110    0.0807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5244    1.6234   -0.7347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6790    0.1709   -0.2549 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.9974    0.0158    0.4090 C   0  0  2  0  0  0  0  0  0  0  0  0
  -10.2559   -1.4107    0.8365 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1313    0.4085   -0.5142 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9363    1.4230   -0.2363 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0691    1.8749   -1.0843 C   0  0  1  0  0  0  0  0  0  0  0  0
  -14.3889    1.7962   -0.3484 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6104    0.3536    0.0467 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7681    3.3315   -1.4689 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4834    3.4380   -2.2271 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8791    3.9276   -2.2632 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8724   -1.5864   -2.1208 C   0  0  2  0  0  0  0  0  0  0  0  0
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    3.6134   -3.2235   -1.6177 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3754   -3.9338   -2.7961 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3870    2.0389    0.8569 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.6315    3.6640    1.6484 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.2067    3.5753   -0.0909 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4461    4.2011    1.7529 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.2715    2.3687    1.9346 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.8982    2.2319   -0.4717 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.9039    4.0083   -0.6390 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1650    4.2876    1.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0715    2.4809    1.2681 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2505    3.4042   -0.2294 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4637    4.1133   -1.3129 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5515    2.0547   -2.1945 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.3190    1.8725   -1.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.8159    0.6447    0.2278 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0870   -0.1419   -1.2818 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5966    1.7172    0.6837 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9941    0.9539   -0.8112 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2227   -0.4254    1.6650 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4714   -0.2843    1.4347 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4925   -1.7350   -0.3466 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4248   -2.5307    0.8299 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6057   -2.8352   -1.3885 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.5435   -1.6482   -1.7535 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8195   -0.4772   -0.4695 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3700   -3.5180   -0.2700 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.3305   -1.5300    2.1032 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6318   -2.7158    1.9620 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9276   -4.5244    1.7962 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9277   -3.5808    3.3360 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9803   -2.1568    0.9172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5507   -3.7190    1.6228 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8948   -4.8758   -0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

  Mrv1652309102201262D          

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M  END
> <DATABASE_ID>
NP0292085

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCCCC(=O)OC[C@H]1O[C@@H](O[C@H]2CC[C@]3(C)[C@H]4CC[C@]5(C)[C@H](CC[C@H]5[C@@H]4CC=C3C2)[C@H](C)\C=C\[C@@H](CC)C(C)C)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C51H88O7/c1-8-10-11-12-13-14-15-16-17-18-19-20-21-22-45(52)56-34-44-46(53)47(54)48(55)49(58-44)57-39-29-31-50(6)38(33-39)25-26-40-42-28-27-41(51(42,7)32-30-43(40)50)36(5)23-24-37(9-2)35(3)4/h23-25,35-37,39-44,46-49,53-55H,8-22,26-34H2,1-7H3/b24-23+/t36-,37-,39+,40+,41-,42+,43+,44-,46-,47+,48-,49-,50+,51-/m1/s1

> <INCHI_KEY>
SQDYRCMAEQXKCQ-BGPOZWQASA-N

> <FORMULA>
C51H88O7

> <MOLECULAR_WEIGHT>
813.258

> <EXACT_MASS>
812.653005174

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
146

> <JCHEM_AVERAGE_POLARIZABILITY>
101.9829221297971

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R,3S,4S,5R,6R)-6-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,3E,5S)-5-ethyl-6-methylhept-3-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate

> <JCHEM_LOGP>
12.632773392000004

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.21480817275626

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.212166672319515

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6490850980813834

> <JCHEM_POLAR_SURFACE_AREA>
105.45000000000002

> <JCHEM_REFRACTIVITY>
236.8874000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4S,5R,6R)-6-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,3E,5S)-5-ethyl-6-methylhept-3-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0     -20.005 -26.950   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -18.672 -26.180   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -17.338 -26.950   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -16.004 -26.180   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -14.670 -26.950   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -13.337 -26.180   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -12.003 -26.950   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -10.669 -26.180   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -9.336 -26.950   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -8.002 -26.180   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -6.668 -26.950   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.335 -26.180   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.001 -26.950   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.667 -26.180   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.334 -26.950   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000 -26.180   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.000 -24.640   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       1.334 -26.950   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.667 -26.180   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.001 -26.950   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.335 -26.180   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.668 -26.950   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       8.002 -26.180   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       9.336 -26.950   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.669 -26.180   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      12.003 -26.950   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      12.003 -28.490   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.337 -27.720   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.669 -29.260   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.669 -30.800   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      12.003 -31.570   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      13.337 -30.800   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      13.337 -29.260   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      14.670 -28.490   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      16.004 -29.260   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      16.004 -30.800   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      17.411 -30.174   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      14.670 -31.570   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      14.991 -33.076   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      16.522 -33.237   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      17.149 -31.830   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      18.655 -31.510   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      19.685 -32.655   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      19.131 -30.046   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      20.637 -29.725   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      21.113 -28.261   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      22.619 -27.941   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      23.095 -26.476   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      20.083 -27.116   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      20.558 -25.652   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      18.576 -27.437   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       9.336 -28.490   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       6.668 -28.490   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0       8.002 -29.260   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0       5.335 -29.260   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0       5.335 -30.800   0.000  0.00  0.00           O+0
HETATM   57  C   UNK     0       4.001 -28.490   0.000  0.00  0.00           C+0
HETATM   58  O   UNK     0       2.667 -29.260   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   57                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   53                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   52                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29   33                                             
CONECT   28   27                                                            
CONECT   29   27   30   52                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   38                                                  
CONECT   33   32   27   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37   38   41                                             
CONECT   37   36                                                            
CONECT   38   36   32   39                                                  
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   36   42                                                  
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47   49                                                  
CONECT   47   46   48                                                       
CONECT   48   47                                                            
CONECT   49   46   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49                                                            
CONECT   52   29   24                                                       
CONECT   53   22   54   55                                                  
CONECT   54   53                                                            
CONECT   55   53   56   57                                                  
CONECT   56   55                                                            
CONECT   57   55   20   58                                                  
CONECT   58   57                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  124    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₅₁H₈₈O₇

Average Mass

813.2580 Da

Monoisotopic Mass

812.65301 Da

IUPAC Name

[(2R,3S,4S,5R,6R)-6-{[(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,3E,5S)-5-ethyl-6-methylhept-3-en-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate

Traditional Name

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCC(=O)OC[C@H]1O[C@@H](O[C@H]2CC[C@]3(C)[C@H]4CC[C@]5(C)[C@H](CC[C@H]5[C@@H]4CC=C3C2)[C@H](C)\C=C\[C@@H](CC)C(C)C)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C51H88O7/c1-8-10-11-12-13-14-15-16-17-18-19-20-21-22-45(52)56-34-44-46(53)47(54)48(55)49(58-44)57-39-29-31-50(6)38(33-39)25-26-40-42-28-27-41(51(42,7)32-30-43(40)50)36(5)23-24-37(9-2)35(3)4/h23-25,35-37,39-44,46-49,53-55H,8-22,26-34H2,1-7H3/b24-23+/t36-,37-,39+,40+,41-,42+,43+,44-,46-,47+,48-,49-,50+,51-/m1/s1

InChI Key

SQDYRCMAEQXKCQ-BGPOZWQASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Labisia pumila	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Stigmastanes and derivatives

Direct Parent

Stigmastanes and derivatives

Alternative Parents

Substituents

C24-propyl-sterol-skeleton
Stigmastane-skeleton
Triterpenoid
Steroidal glycoside
Saccharolipid
Delta-5-steroid
Glycosyl compound
O-glycosyl compound
Oxane
Monosaccharide
Secondary alcohol
Carboxylic acid ester
Organoheterocyclic compound
Polyol
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Acetal
Oxacycle
Alcohol
Organic oxygen compound
Organic oxide
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	12.63	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	105.45 Å²	ChemAxon
Rotatable Bond Count	24	ChemAxon
Refractivity	236.89 m³·mol⁻¹	ChemAxon
Polarizability	101.98 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

113385263

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13501830

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate (NP0292085)

MOL for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

3D MOL for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

3D SDF for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

3D-SDF for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

PDB for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

3D PDB for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

SMILES for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

INCHI for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

Structure for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)

3D Structure for NP0292085 ([(2r,3s,4s,5r,6r)-6-{[(1r,3as,3bs,7s,9ar,9bs,11ar)-1-[(2r,3e,5s)-5-ethyl-6-methylhept-3-en-2-yl]-9a,11a-dimethyl-1h,2h,3h,3ah,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl hexadecanoate)