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Record Information
Version2.0
Created at2022-09-09 23:11:27 UTC
Updated at2022-09-09 23:11:27 UTC
NP-MRD IDNP0291913
Secondary Accession NumbersNone
Natural Product Identification
Common Name(3s,3ar,6s,6ar,10s,12r,15r,15ar)-3-benzyl-1,6,12-trihydroxy-4,5,10,12-tetramethyl-11-oxo-3h,3ah,6h,6ah,9h,10h,15h-cycloundeca[d]isoindol-15-yl acetate
DescriptionCytochalasin C belongs to the class of organic compounds known as cytochalasans. These are fungal metabolites structurally characterized by the presence of an isoindolone nucleus fused to a macrocyclic ring, which can either a lactone, as in cytochalasin B, a carbonate, as in cytochalasin E, or a carbocycle, as in cytochalasin D, H, and K. (3s,3ar,6s,6ar,10s,12r,15r,15ar)-3-benzyl-1,6,12-trihydroxy-4,5,10,12-tetramethyl-11-oxo-3h,3ah,6h,6ah,9h,10h,15h-cycloundeca[d]isoindol-15-yl acetate is found in Xylaria mellissii. (3s,3ar,6s,6ar,10s,12r,15r,15ar)-3-benzyl-1,6,12-trihydroxy-4,5,10,12-tetramethyl-11-oxo-3h,3ah,6h,6ah,9h,10h,15h-cycloundeca[d]isoindol-15-yl acetate was first documented in 2019 (PMID: 31351910). Based on a literature review a small amount of articles have been published on Cytochalasin C (PMID: 33585752) (PMID: 33325741) (PMID: 33670169) (PMID: 33188275).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H37NO6
Average Mass507.6270 Da
Monoisotopic Mass507.26209 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
C[C@H]1C\C=C\[C@H]2[C@H](O)C(C)=C(C)[C@H]3[C@H](CC4=CC=CC=C4)N=C(O)[C@@]23[C@H](OC(C)=O)\C=C\[C@@](C)(O)C1=O
InChI Identifier
InChI=1S/C30H37NO6/c1-17-10-9-13-22-26(33)19(3)18(2)25-23(16-21-11-7-6-8-12-21)31-28(35)30(22,25)24(37-20(4)32)14-15-29(5,36)27(17)34/h6-9,11-15,17,22-26,33,36H,10,16H2,1-5H3,(H,31,35)/b13-9+,15-14+/t17-,22-,23-,24+,25-,26+,29+,30+/m0/s1
InChI KeyNAIODHJWOHMDJX-FLMVKAFASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Xylaria mellissiiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cytochalasans. These are fungal metabolites structurally characterized by the presence of an isoindolone nucleus fused to a macrocyclic ring, which can either a lactone, as in cytochalasin B, a carbonate, as in cytochalasin E, or a carbocycle, as in cytochalasin D, H, and K.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassCytochalasans
Sub ClassNot Available
Direct ParentCytochalasans
Alternative Parents
Substituents
  • Carbocyclic cytochalasan skeleton
  • Cytochalasan
  • Isoindolone
  • Isoindoline
  • Isoindole
  • Isoindole or derivatives
  • Acyloin
  • Monocyclic benzene moiety
  • Benzenoid
  • Pyrrolidone
  • 2-pyrrolidone
  • Tertiary alcohol
  • Pyrrolidine
  • Carboxamide group
  • Carboxylic acid ester
  • Cyclic ketone
  • Ketone
  • Lactam
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Organoheterocyclic compound
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Alcohol
  • Organic oxygen compound
  • Carbonyl group
  • Organonitrogen compound
  • Organooxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00011323
Chemspider ID60498501
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12308862
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wang WX, Li ZH, He J, Feng T, Li J, Liu JK: Cytotoxic cytochalasans from fungus Xylaria longipes. Fitoterapia. 2019 Sep;137:104278. doi: 10.1016/j.fitote.2019.104278. Epub 2019 Jul 25. [PubMed:31351910 ]
  2. Kushwaha M, Qayum A, Jain SK, Singh J, Srivastava AK, Srivastava S, Sharma N, Abrol V, Malik R, Singh SK, Vishwakarma RA, Jaglan S: Tandem MS-Based Metabolite Profiling of 19,20-Epoxycytochalasin C Reveals the Importance of a Hydroxy Group at the C7 Position for Biological Activity. ACS Omega. 2021 Jan 25;6(5):3717-3726. doi: 10.1021/acsomega.0c05307. eCollection 2021 Feb 9. [PubMed:33585752 ]
  3. Zhang Q, Huang ZP, Zhao YY, Zhao Q, Chen JH, Ma WG, Zhang XM: Six 19,20-epoxycytochalasans from endophytic Diaporthe sp. RJ-47. Nat Prod Res. 2022 Jul;36(13):3375-3380. doi: 10.1080/14786419.2020.1859504. Epub 2020 Dec 16. [PubMed:33325741 ]
  4. Lambert C, Pourmoghaddam MJ, Cedeno-Sanchez M, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stradal TEB, Stadler M: Resolution of the Hypoxylon fuscum Complex (Hypoxylaceae, Xylariales) and Discovery and Biological Characterization of Two of Its Prominent Secondary Metabolites. J Fungi (Basel). 2021 Feb 11;7(2):131. doi: 10.3390/jof7020131. [PubMed:33670169 ]
  5. Barthelemy M, Guerineau V, Genta-Jouve G, Roy M, Chave J, Guillot R, Pellissier L, Wolfender JL, Stien D, Eparvier V, Touboul D: Identification and dereplication of endophytic Colletotrichum strains by MALDI TOF mass spectrometry and molecular networking. Sci Rep. 2020 Nov 13;10(1):19788. doi: 10.1038/s41598-020-74852-w. [PubMed:33188275 ]
  6. LOTUS database [Link]