NP-MRD: Showing NP-Card for (2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid (NP0291485)

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Record Information

Version

2.0

Created at

2022-09-09 22:35:58 UTC

Updated at

2022-09-09 22:35:59 UTC

NP-MRD ID

NP0291485

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid

Description

SCHEMBL4441253 belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Based on a literature review very few articles have been published on SCHEMBL4441253.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 37  0  0  0  0  0  0  0  0999 V2000
    3.4731   -1.3535    0.7376 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3405    0.0930    0.3896 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5281    0.4089   -0.5387 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0592    0.5137   -0.2341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115    0.3049    0.5746 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5221   -1.0469    0.9016 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3401    0.8954   -0.1691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1419    2.0753   -0.5827 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    0.2769   -0.4315 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8682   -1.0872   -0.0398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2726   -1.3691   -0.5661 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2080   -1.7792   -1.9032 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8685    0.0113   -0.5420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6948    0.8376   -1.0990 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9481    2.2646   -0.8780 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8436    2.7875   -1.6257 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3525    3.1069    0.0261 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5740   -1.5280    0.9492 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8864   -1.6669    1.6022 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2476   -1.9787   -0.1493 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5326    0.7246    1.2985 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4064   -0.1511   -0.1917 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2033    0.0652   -1.5525 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6843    1.4882   -0.5986 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9702   -0.0108   -1.2412 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1252    1.6024   -0.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9372    0.8819    1.5506 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5715   -1.2819    1.8944 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9788   -1.6899    0.2461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8395   -1.2667    1.0335 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659   -1.7308   -0.6304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8125   -2.1007    0.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7377   -2.6616   -1.9705 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0214    0.3314    0.5265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7677    0.1261   -1.1533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6691    0.5682   -2.1829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7327    3.3390    0.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 17  1  0
 15 16  2  0
 14  9  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  5 27  1  1
  6 28  1  0
  6 29  1  0
 10 30  1  0
 10 31  1  0
 11 32  1  1
 12 33  1  0
 13 34  1  0
 13 35  1  0
 14 36  1  6
 17 37  1  0
M  END


  Mrv1652309102200362D          

 17 17  0  0  1  0            999 V2000
   -1.7484   -1.4811    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0339   -1.8936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0339   -2.7186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3194   -1.4811    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3950   -1.8936    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3950   -2.7186    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1095   -1.4811    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8240   -1.8936    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1095   -0.6561    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4421   -0.1712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6970    0.6134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2121    1.2809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5220    0.6134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7769   -0.1712    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5616   -0.4261    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7331   -1.2331    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1747    0.1259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0291485

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C[C@H](N)C(=O)N1CC(O)C[C@H]1C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H20N2O4/c1-6(2)3-8(12)10(15)13-5-7(14)4-9(13)11(16)17/h6-9,14H,3-5,12H2,1-2H3,(H,16,17)/t7?,8-,9-/m0/s1

> <INCHI_KEY>
JCCZCUUYYHWRGX-NPPUSCPJSA-N

> <FORMULA>
C11H20N2O4

> <MOLECULAR_WEIGHT>
244.291

> <EXACT_MASS>
244.142307132

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
25.146746334620197

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-1-[(2S)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid

> <JCHEM_LOGP>
-3.0006214076385582

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.826415847135124

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.750956860051281

> <JCHEM_PKA_STRONGEST_BASIC>
8.425391378211522

> <JCHEM_POLAR_SURFACE_AREA>
103.86

> <JCHEM_REFRACTIVITY>
60.47530000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-1-[(2S)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.264  -2.765   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.930  -3.535   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.930  -5.075   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.596  -2.765   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.737  -3.535   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       0.737  -5.075   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       2.071  -2.765   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       3.405  -3.535   0.000  0.00  0.00           O+0
HETATM    9  N   UNK     0       2.071  -1.225   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       0.825  -0.320   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.301   1.145   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.396   2.391   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       2.841   1.145   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.317  -0.320   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.782  -0.795   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.102  -2.302   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       5.926   0.235   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13    9   15                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₂₀N₂O₄

Average Mass

244.2910 Da

Monoisotopic Mass

244.14231 Da

IUPAC Name

(2S)-1-[(2S)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid

Traditional Name

(2S)-1-[(2S)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

CC(C)C[C@H](N)C(=O)N1CC(O)C[C@H]1C(O)=O

InChI Identifier

InChI=1S/C11H20N2O4/c1-6(2)3-8(12)10(15)13-5-7(14)4-9(13)11(16)17/h6-9,14H,3-5,12H2,1-2H3,(H,16,17)/t7?,8-,9-/m0/s1

InChI Key

JCCZCUUYYHWRGX-NPPUSCPJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
Leucine or derivatives
Proline or derivatives
N-acyl-l-alpha-amino acid
N-acyl-alpha amino acid or derivatives
N-acyl-alpha-amino acid
Alpha-amino acid amide
Alpha-amino acid or derivatives
Pyrrolidine carboxylic acid or derivatives
Pyrrolidine carboxylic acid
N-acylpyrrolidine
Tertiary carboxylic acid amide
Pyrrolidine
Amino acid
Secondary alcohol
Carboxamide group
Amino acid or derivatives
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary amine
Organooxygen compound
Organonitrogen compound
Primary aliphatic amine
Carbonyl group
Amine
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3	ChemAxon
pKa (Strongest Acidic)	3.75	ChemAxon
pKa (Strongest Basic)	8.43	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	103.86 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	60.48 m³·mol⁻¹	ChemAxon
Polarizability	25.15 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

61162303

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid (NP0291485)

MOL for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

3D MOL for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

3D SDF for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

3D-SDF for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

PDB for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

3D PDB for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

SMILES for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

INCHI for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

Structure for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)

3D Structure for NP0291485 ((2s)-1-[(2s)-2-amino-4-methylpentanoyl]-4-hydroxypyrrolidine-2-carboxylic acid)