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Showing NP-Card for (4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one (NP0291265)

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Record Information
Version1.0
Created at2022-09-09 22:17:23 UTC
Updated at2022-09-09 22:17:23 UTC
NP-MRD IDNP0291265
Secondary Accession NumbersNone
Natural Product Identification
Common Name(4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one
DescriptionHypocnone A belongs to the class of organic compounds known as alpha-chloroketones. These are organic compounds contaning a chlorine atom attached to the alpha carbon atom relative to C=O group. (4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one is found in Trichoderma koningii. It was first documented in 2022 (PMID: 36109246). Based on a literature review a significant number of articles have been published on Hypocnone A (PMID: 36087713) (PMID: 36083970) (PMID: 36091400) (PMID: 36088383).
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)


  Mrv1652309102200172D          

 11 11  0  0  1  0            999 V2000
   -0.1467    2.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2822    2.3518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4652   -0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
  4 10  1  0  0  0  0
 10 11  1  1  0  0  0
M  END
Download

3D MOL for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)

     RDKit          3D

 20 20  0  0  0  0  0  0  0  0999 V2000
   -2.4792    0.2299   -0.5139 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4396   -0.6187    0.1659 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6352   -0.6567    1.5562 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0517   -0.0850   -0.0551 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3268    0.9831   -0.7224 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7945    1.1132   -0.6727 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4488    2.1470   -0.7586 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2028   -0.3285   -0.4953 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8357   -0.4875    0.1096 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    1.1471   -0.7324    0.5042 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4122   -0.1385    1.7456 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1087    0.6066   -1.4891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8502    1.0552    0.1453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3623   -0.4096   -0.7504 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5314   -1.6662   -0.1829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5891   -0.4347    1.7617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3758    1.6491   -1.2232 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9955   -0.8413   -1.4356 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0471   -1.8287    0.5971 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2126    0.4436    1.7137 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10  4  1  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  6
  3 16  1  0
  5 17  1  0
  8 18  1  6
 10 19  1  1
 11 20  1  0
M  END
Download

3D SDF for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)


  Mrv1652309102200172D          

 11 11  0  0  1  0            999 V2000
   -0.1467    2.3518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.9393    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2822    2.3518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4652   -0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
  4 10  1  0  0  0  0
 10 11  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0291265

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(O)C1=CC(=O)[C@@H](Cl)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C7H9ClO3/c1-3(9)4-2-5(10)6(8)7(4)11/h2-3,6-7,9,11H,1H3/t3?,6-,7+/m1/s1

> <INCHI_KEY>
SVIWGJLBRISERR-YRSLTGHTSA-N

> <FORMULA>
C7H9ClO3

> <MOLECULAR_WEIGHT>
176.6

> <EXACT_MASS>
176.0240218

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
20

> <JCHEM_AVERAGE_POLARIZABILITY>
16.152635611953748

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4S,5S)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one

> <JCHEM_LOGP>
-0.014855982666666614

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.421839707040522

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.85543002047293

> <JCHEM_PKA_STRONGEST_BASIC>
-2.877415263495169

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
40.9659

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(4S,5S)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one

> <JCHEM_VEBER_RULE>
0

$$$$
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3D-SDF for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)

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PDB for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)
HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.274   4.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.060   3.620   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       2.393   4.390   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.735  -1.536   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    9 Cl   UNK     0      -0.615  -1.536   0.000  0.00  0.00          Cl+0
HETATM   10  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.651   1.651   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8    4   11                                                  
CONECT   11   10                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   22    0
END

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3D PDB for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)
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SMILES for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)
CC(O)C1=CC(=O)[C@@H](Cl)[C@H]1O
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INCHI for NP0291265 ((4s,5s)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one)
InChI=1S/C7H9ClO3/c1-3(9)4-2-5(10)6(8)7(4)11/h2-3,6-7,9,11H,1H3/t3?,6-,7+/m1/s1
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View in JSmol
SynonymsNot Available
Chemical FormulaC7H9ClO3
Average Mass176.6000 Da
Monoisotopic Mass176.02402 Da
IUPAC Name(4S,5S)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one
Traditional Name(4S,5S)-5-chloro-4-hydroxy-3-(1-hydroxyethyl)cyclopent-2-en-1-one
CAS Registry NumberNot Available
SMILES
CC(O)C1=CC(=O)[C@@H](Cl)[C@H]1O
InChI Identifier
InChI=1S/C7H9ClO3/c1-3(9)4-2-5(10)6(8)7(4)11/h2-3,6-7,9,11H,1H3/t3?,6-,7+/m1/s1
InChI KeySVIWGJLBRISERR-YRSLTGHTSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Trichoderma koningiiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha-chloroketones. These are organic compounds contaning a chlorine atom attached to the alpha carbon atom relative to C=O group.
KingdomOrganic compounds  
Super ClassOrganic oxygen compounds  
ClassOrganooxygen compounds  
Sub ClassCarbonyl compounds  
Direct ParentAlpha-chloroketones  
Alternative Parents
Substituents
  • Alpha-chloroketone
    • 

  • Cyclic ketone
    • 

  • Secondary alcohol
    • 

  • Halohydrin
    • 

  • Chlorohydrin
    • 

  • Organic oxide
    • 

  • Hydrocarbon derivative
    • 

  • Organochloride
    • 

  • Organohalogen compound
    • 

  • Alkyl halide
    • 

  • Alkyl chloride
    • 

  • Alcohol
    • 

  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.015ChemAxon
pKa (Strongest Acidic)12.86ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity40.97 m³·mol⁻¹ChemAxon
Polarizability16.15 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID71048900  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684056  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. O'Byrne LJ, Bodunde EO, Maher GM, Khashan AS, Greene RM, Browne JP, Mccarthy FP: Patient reported outcome measures evaluating postpartum maternal health and wellbeing: a systematic review and evaluation of measurement properties. Am J Obstet Gynecol MFM. 2022 Sep 7:100743. doi: 10.1016/j.ajogmf.2022.100743. [PubMed:36087713  ] 
  2. Panchal N, Desai C, Ghosal R: Fecal glucocorticoid metabolite levels in captive Indian leopards (Panthera pardus fusca) housed under three different enrichment regimes. PLoS One. 2022 Sep 9;17(9):e0261796. doi: 10.1371/journal.pone.0261796. eCollection 2022. [PubMed:36083970  ] 
  3. Yuksel S, Bonus M, Schwabe T, Pfleger C, Zimmer T, Enke U, Sass I, Gohlke H, Benndorf K, Kusch J: Uncoupling of Voltage- and Ligand-Induced Activation in HCN2 Channels by Glycine Inserts. Front Physiol. 2022 Aug 25;13:895324. doi: 10.3389/fphys.2022.895324. eCollection 2022. [PubMed:36091400  ] 
  4. Peter A, Balogh A, Csanadi Z, Danko K, Griger Z: Subclinical systolic and diastolic myocardial dysfunction in polyphasic polymyositis/dermatomyositis: a 2-year longitudinal study. Arthritis Res Ther. 2022 Sep 10;24(1):219. doi: 10.1186/s13075-022-02906-7. [PubMed:36088383  ] 
  5. Dagdigian PJ: Theoretical investigation of rotationally inelastic collisions of OH(X(2)Pi) with hydrogen atoms. J Chem Phys. 2022 Sep 14;157(10):104305. doi: 10.1063/5.0110724. [PubMed:36109246  ] 
  6. LOTUS database [Link]