NP-MRD: Showing NP-Card for 3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid (NP0291172)

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Record Information

Version

1.0

Created at

2022-09-09 22:10:07 UTC

Updated at

2022-09-09 22:10:07 UTC

NP-MRD ID

NP0291172

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid

Description

3,4-Secours-20(30)-ene-3-oic acid belongs to the class of organic compounds known as steroid acids. Steroid acids are compounds containing a carboxyl group attached to a steroid backbone. 3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid is found in Asclepias curassavica. It was first documented in 2022 (PMID: 36115695). Based on a literature review a significant number of articles have been published on 3,4-Secours-20(30)-ene-3-oic acid (PMID: 36115691) (PMID: 36115694) (PMID: 36115693) (PMID: 36115692).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102200102D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309102200102D          

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  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 14 13  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 22 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 14 28  1  0  0  0  0
  9 28  1  0  0  0  0
 28 29  1  6  0  0  0
 30 11  1  1  0  0  0
  5 30  1  0  0  0  0
 30 31  1  0  0  0  0
  2 31  1  0  0  0  0
 31 32  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0291172

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@H]1CC[C@]2(C)[C@H](CC[C@@H]3[C@@H]4[C@@H](C)C(=C)CC[C@]4(C)CC[C@@]23C)[C@@]1(C)CCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O2/c1-19(2)22-12-16-30(8)24(28(22,6)15-13-25(31)32)10-9-23-26-21(4)20(3)11-14-27(26,5)17-18-29(23,30)7/h19,21-24,26H,3,9-18H2,1-2,4-8H3,(H,31,32)/t21-,22-,23+,24+,26-,27+,28-,29+,30+/m0/s1

> <INCHI_KEY>
DHQLERRYBRCVCO-MHISZOMXSA-N

> <FORMULA>
C30H50O2

> <MOLECULAR_WEIGHT>
442.728

> <EXACT_MASS>
442.38108085

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
55.04133213205032

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(1S,2S,4aR,4bR,6aR,10R,10aS,10bR,12aR)-1,4a,4b,6a,10-pentamethyl-9-methylidene-2-(propan-2-yl)-octadecahydrochrysen-1-yl]propanoic acid

> <JCHEM_LOGP>
7.966863230666668

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.928994683403806

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
132.98629999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
3-[(1S,2S,4aR,4bR,6aR,10R,10aS,10bR,12aR)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2H-chrysen-1-yl]propanoic acid

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       4.652  -1.522   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.660  -2.686   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.156  -4.141   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.164  -5.305   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.677  -5.014   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.172  -6.469   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.685  -6.178   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.197  -5.887   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.701  -4.432   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.709  -5.596   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.693  -3.268   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.197  -1.813   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.709  -1.522   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.717  -2.686   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      14.230  -2.395   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      15.551  -1.604   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.680  -0.956   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.652   0.239   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.103   1.678   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      15.074   2.873   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      12.582   1.921   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      15.238  -3.559   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      16.750  -3.268   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      17.758  -4.432   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      17.254  -1.813   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      14.734  -5.014   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.221  -5.305   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.213  -4.141   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      12.661  -5.615   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       8.181  -3.559   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       7.172  -2.395   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       7.677  -0.940   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   31                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   30                                             
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11   28                                             
CONECT   10    9                                                            
CONECT   11    9   12   30                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   28                                                  
CONECT   15   14   16   17   22                                             
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22   15   23   26                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   22   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   14    9   29                                             
CONECT   29   28                                                            
CONECT   30   11    5   31                                                  
CONECT   31   30    2   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   70    0
END

View in JSmol

Synonyms

Value	Source
3,4-Secours-20(30)-ene-3-Oate	Generator

Chemical Formula

C₃₀H₅₀O₂

Average Mass

442.7280 Da

Monoisotopic Mass

442.38108 Da

IUPAC Name

3-[(1S,2S,4aR,4bR,6aR,10R,10aS,10bR,12aR)-1,4a,4b,6a,10-pentamethyl-9-methylidene-2-(propan-2-yl)-octadecahydrochrysen-1-yl]propanoic acid

Traditional Name

3-[(1S,2S,4aR,4bR,6aR,10R,10aS,10bR,12aR)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2H-chrysen-1-yl]propanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1CC[C@]2(C)[C@H](CC[C@@H]3[C@@H]4[C@@H](C)C(=C)CC[C@]4(C)CC[C@@]23C)[C@@]1(C)CCC(O)=O

InChI Identifier

InChI=1S/C30H50O2/c1-19(2)22-12-16-30(8)24(28(22,6)15-13-25(31)32)10-9-23-26-21(4)20(3)11-14-27(26,5)17-18-29(23,30)7/h19,21-24,26H,3,9-18H2,1-2,4-8H3,(H,31,32)/t21-,22-,23+,24+,26-,27+,28-,29+,30+/m0/s1

InChI Key

DHQLERRYBRCVCO-MHISZOMXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Asclepias curassavica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid acids. Steroid acids are compounds containing a carboxyl group attached to a steroid backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid acids

Direct Parent

Steroid acids

Alternative Parents

Substituents

Steroid acid
Sesquiterpenoid
Carbocyclic fatty acid
Fatty acyl
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.97	ChemAxon
pKa (Strongest Acidic)	4.93	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	132.99 m³·mol⁻¹	ChemAxon
Polarizability	55.04 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101376175

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hosokawa K, Nakao S: Somatic mutations and clonal expansions in paroxysmal nocturnal hemoglobinuria. Semin Hematol. 2022 Jul;59(3):143-149. doi: 10.1053/j.seminhematol.2022.08.004. Epub 2022 Aug 22. [PubMed:36115691 ]
eBioMedicine: The dynamics of the immune system and gut in the pathophysiology of multiple sclerosis. EBioMedicine. 2022 Sep;83:104273. doi: 10.1016/j.ebiom.2022.104273. [PubMed:36115695 ]
Lundgren S, Keranen M, Wartiovaara-Kautto U, Myllymaki M: Somatic compensation of inherited bone marrow failure. Semin Hematol. 2022 Jul;59(3):167-173. doi: 10.1053/j.seminhematol.2022.07.002. Epub 2022 Aug 3. [PubMed:36115694 ]
Alcedo PE, Gutierrez-Rodrigues F, Patel BA: Somatic mutations in VEXAS Syndrome and Erdheim-Chester disease: Inflammatory myeloid diseases. Semin Hematol. 2022 Jul;59(3):156-166. doi: 10.1053/j.seminhematol.2022.07.003. Epub 2022 Aug 3. [PubMed:36115693 ]
Todisco G, Moura PL, Hellstrom-Lindberg E: Clinical manifestations of clonal hematopoiesis: What has SF3B1-mutant MDS taught us? Semin Hematol. 2022 Jul;59(3):150-155. doi: 10.1053/j.seminhematol.2022.08.002. Epub 2022 Aug 11. [PubMed:36115692 ]
LOTUS database [Link]

Showing NP-Card for 3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid (NP0291172)

MOL for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

3D MOL for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

3D SDF for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

3D-SDF for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

PDB for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

3D PDB for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

SMILES for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

INCHI for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

Structure for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)

3D Structure for NP0291172 (3-[(1s,2s,4ar,4br,6ar,10r,10as,10br,12ar)-2-isopropyl-1,4a,4b,6a,10-pentamethyl-9-methylidene-dodecahydro-2h-chrysen-1-yl]propanoic acid)