NP-MRD: Showing NP-Card for 2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione (NP0291159)

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Record Information

Version

2.0

Created at

2022-09-09 22:08:55 UTC

Updated at

2022-09-09 22:08:55 UTC

NP-MRD ID

NP0291159

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione

Description

2-(3,7-Dimethylocta-2,6-dien-1-yl)-1,4-dihydronaphthalene-1,4-dione belongs to the class of organic compounds known as menaquinones. These are vitamin K2 compounds consisting of a naphtho-1,4-quinone ring system, which is substituted at the 2-position by an isoprenyl side-chain, and usually, at the 3-position by a methyl group. 2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione is found in Sesamum indicum. 2-(3,7-Dimethylocta-2,6-dien-1-yl)-1,4-dihydronaphthalene-1,4-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 45  0  0  0  0  0  0  0  0999 V2000
    6.7263    0.1240    0.6566 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2335    0.2119    0.3081 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8429    1.3669   -0.5136 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4408   -0.7266    0.7341 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0079   -0.9684    0.6043 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1532    0.0369   -0.0332 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6781   -0.3976   -0.1030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2134    0.5737   -0.7902 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2763   -1.5301    0.3689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0099   -2.1949    0.4510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2274   -1.4398    0.1366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0262   -1.7900   -0.8884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2328   -1.0417   -1.1905 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9883   -1.3641   -2.1570 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6582    0.1200   -0.4146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7983    0.8381   -0.6883 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1957    1.9438    0.0583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3851    2.3067    1.1126 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2404    1.5926    1.3943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8599    0.4932    0.6393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6588   -0.2720    0.9175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9578    0.1056    1.8954 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    1.1318    0.8712 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8607   -0.5288    1.5210 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2214   -0.2563   -0.2348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6535    0.9786   -1.5599 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9967    1.9621   -0.1485 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7353    2.0850   -0.5906 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0020   -1.5276    1.3398 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9173   -1.9858    0.0815 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6365   -1.1696    1.6625 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4973    0.3155   -1.0190 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1076    0.9796    0.5938 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4361    1.0941   -1.5613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5336    1.3274   -0.0697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0318    0.1302   -1.3584 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1227   -2.1526    0.8305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0055   -3.1919   -0.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1199   -2.5374    1.5370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7346   -2.6548   -1.4826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4120    0.5271   -1.5223 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1026    2.4735   -0.2003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6610    3.1596    1.7150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5866    1.8522    2.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 21 11  1  0
 20 15  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  3 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  8 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
 10 38  1  0
 10 39  1  0
 12 40  1  0
 16 41  1  0
 17 42  1  0
 18 43  1  0
 19 44  1  0
M  END


  Mrv1533004171515312D          

 22 23  0  0  0  0            999 V2000
   -2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  4  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  0  0  0  0
  9 19  1  0  0  0  0
 19 20  2  0  0  0  0
  6 21  1  0  0  0  0
  2 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0291159

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCCC(C)=CCC1=CC(=O)C2=CC=CC=C2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H22O2/c1-14(2)7-6-8-15(3)11-12-16-13-19(21)17-9-4-5-10-18(17)20(16)22/h4-5,7,9-11,13H,6,8,12H2,1-3H3

> <INCHI_KEY>
WALCBDVYDNDULV-UHFFFAOYSA-N

> <FORMULA>
C20H22O2

> <MOLECULAR_WEIGHT>
294.394

> <EXACT_MASS>
294.161979948

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
34.55357628805278

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(3,7-dimethylocta-2,6-dien-1-yl)-1,4-dihydronaphthalene-1,4-dione

> <ALOGPS_LOGP>
4.77

> <JCHEM_LOGP>
4.764728325

> <ALOGPS_LOGS>
-4.94

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.479467468970626

> <JCHEM_PKA_STRONGEST_BASIC>
-7.173838499261718

> <JCHEM_POLAR_SURFACE_AREA>
34.14

> <JCHEM_REFRACTIVITY>
93.54449999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.38e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0      -4.001 -11.550   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   22                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   21                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   19                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13   19                                                  
CONECT   19   18    9   20                                                  
CONECT   20   19                                                            
CONECT   21    6                                                            
CONECT   22    2                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₂O₂

Average Mass

294.3940 Da

Monoisotopic Mass

294.16198 Da

IUPAC Name

2-(3,7-dimethylocta-2,6-dien-1-yl)-1,4-dihydronaphthalene-1,4-dione

Traditional Name

2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(C)=CCC1=CC(=O)C2=CC=CC=C2C1=O

InChI Identifier

InChI=1S/C20H22O2/c1-14(2)7-6-8-15(3)11-12-16-13-19(21)17-9-4-5-10-18(17)20(16)22/h4-5,7,9-11,13H,6,8,12H2,1-3H3

InChI Key

WALCBDVYDNDULV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sesamum indicum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as menaquinones. These are vitamin K2 compounds consisting of a naphtho-1,4-quinone ring system, which is substituted at the 2-position by an isoprenyl side-chain, and usually, at the 3-position by a methyl group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Quinone and hydroquinone lipids

Direct Parent

Menaquinones

Alternative Parents

Substituents

Menaquinone
Naphthoquinone
Naphthalene
Monoterpenoid
Bicyclic monoterpenoid
Aromatic monoterpenoid
Aryl ketone
Quinone
Benzenoid
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.77	ALOGPS
logP	4.76	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	12.48	ChemAxon
pKa (Strongest Basic)	-7.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	34.14 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	93.54 m³·mol⁻¹	ChemAxon
Polarizability	34.55 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

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METLIN ID

Not Available

PubChem Compound

440800

PDB ID

Not Available

ChEBI ID

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Good Scents ID

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References

General References

LOTUS database [Link]

Showing NP-Card for 2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione (NP0291159)

MOL for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

3D MOL for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

3D SDF for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

3D-SDF for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

PDB for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

3D PDB for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

SMILES for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

INCHI for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

Structure for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)

3D Structure for NP0291159 (2-(3,7-dimethylocta-2,6-dien-1-yl)naphthalene-1,4-dione)