NP-MRD: Showing NP-Card for (2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione (NP0290699)

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Record Information

Version

2.0

Created at

2022-09-09 21:30:30 UTC

Updated at

2022-09-09 21:30:30 UTC

NP-MRD ID

NP0290699

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione

Description

(2R)-2beta-[2-(3,4-Dihydroxyphenyl)ethoxy]-5alpha-hydroxy-6beta-(hydroxymethyl)tetrahydro-2H-pyran-3,4-dione belongs to the class of organic compounds known as tyrosols and derivatives. Tyrosols and derivatives are compounds containing a hydroxyethyl group attached to the C4 carbon of a phenol group. (2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione is found in Chelone obliqua. Based on a literature review very few articles have been published on (2R)-2beta-[2-(3,4-Dihydroxyphenyl)ethoxy]-5alpha-hydroxy-6beta-(hydroxymethyl)tetrahydro-2H-pyran-3,4-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 39  0  0  0  0  0  0  0  0999 V2000
    2.4856   -1.1346   -2.7036 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4905   -0.4456   -1.6506 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6331    0.3153   -1.1861 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4965    0.6651   -2.0180 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7435    0.6536    0.2505 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9786    0.2816    0.7798 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6021   -0.0851    0.9212 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5937    0.1158    2.4125 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7595   -0.3357    2.9870 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4327    0.3641    0.3178 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2278   -0.4085   -0.8185 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1445   -0.0687   -1.5766 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8120   -1.0014   -1.7981 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5435   -1.5247   -0.6060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3075   -0.5112    0.1534 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8457    0.1648    1.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6338    1.1214    1.9064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8798    1.3753    1.4197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6536    2.3275    2.0709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3500    0.7068    0.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6348    1.0245   -0.1158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5780   -0.2328   -0.3191 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5877    1.7648    0.3326 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6792    0.6564    0.2061 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7421   -1.1640    0.6820 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7448   -0.4719    2.8186 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3733    1.1755    2.6440 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1189   -1.0989    2.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0836   -1.4617   -0.4677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4767   -1.8287   -2.4773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6077   -0.4850   -2.4302 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2232   -2.3349   -0.9559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8009   -1.9536    0.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8566   -0.0720    1.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1825    1.5950    2.7615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5861    2.5238    1.7141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9881    0.5452   -0.9154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9573   -0.7575   -1.1897 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8  7  1  0
  7 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  2  0
 11  2  1  0
  2  1  2  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  5  7  1  0
 22 15  1  0
  9 28  1  0
  8 26  1  0
  8 27  1  0
  7 25  1  1
 11 29  1  1
 13 30  1  0
 13 31  1  0
 14 32  1  0
 14 33  1  0
 16 34  1  0
 17 35  1  0
 19 36  1  0
 21 37  1  0
 22 38  1  0
  5 23  1  6
  6 24  1  0
M  END


  Mrv1652309092223302D          

 22 23  0  0  1  0            999 V2000
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  6  0  0  0
  5  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 15 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0290699

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@H]1O[C@@H](OCCC2=CC=C(O)C(O)=C2)C(=O)C(=O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C14H16O8/c15-6-10-11(18)12(19)13(20)14(22-10)21-4-3-7-1-2-8(16)9(17)5-7/h1-2,5,10-11,14-18H,3-4,6H2/t10-,11-,14-/m1/s1

> <INCHI_KEY>
YLCIIGMCDMDYJF-JTNHKYCSSA-N

> <FORMULA>
C14H16O8

> <MOLECULAR_WEIGHT>
312.274

> <EXACT_MASS>
312.084517475

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
29.431370334030124

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,5R,6R)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione

> <JCHEM_LOGP>
0.5746167856666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.959498702930267

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.287766399999116

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9872188701257265

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
72.71420000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,5R,6R)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       8.002  -7.700   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       4.001 -10.010   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       4.001  -6.930   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   10                                                  
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    7   11                                                       
CONECT   11   10    2   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   15                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol

Synonyms

Value	Source
(2R)-2b-[2-(3,4-Dihydroxyphenyl)ethoxy]-5a-hydroxy-6b-(hydroxymethyl)tetrahydro-2H-pyran-3,4-dione	Generator
(2R)-2Β-[2-(3,4-dihydroxyphenyl)ethoxy]-5α-hydroxy-6β-(hydroxymethyl)tetrahydro-2H-pyran-3,4-dione	Generator

Chemical Formula

C₁₄H₁₆O₈

Average Mass

312.2740 Da

Monoisotopic Mass

312.08452 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

OC[C@H]1O[C@@H](OCCC2=CC=C(O)C(O)=C2)C(=O)C(=O)[C@@H]1O

InChI Identifier

InChI=1S/C14H16O8/c15-6-10-11(18)12(19)13(20)14(22-10)21-4-3-7-1-2-8(16)9(17)5-7/h1-2,5,10-11,14-18H,3-4,6H2/t10-,11-,14-/m1/s1

InChI Key

YLCIIGMCDMDYJF-JTNHKYCSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chelone obliqua	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tyrosols and derivatives. Tyrosols and derivatives are compounds containing a hydroxyethyl group attached to the C4 carbon of a phenol group.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenols

Sub Class

Tyrosols and derivatives

Direct Parent

Tyrosols and derivatives

Alternative Parents

Substituents

Tyrosol derivative
Catechol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Monocyclic benzene moiety
Oxane
Cyclic ketone
Secondary alcohol
Ketone
Acetal
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Organooxygen compound
Primary alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxide
Aldehyde
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102333450

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione (NP0290699)

MOL for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

3D MOL for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

3D SDF for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

3D-SDF for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

PDB for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

3D PDB for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

SMILES for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

INCHI for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

Structure for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)

3D Structure for NP0290699 ((2r,5r,6r)-2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-(hydroxymethyl)oxane-3,4-dione)