NP-MRD: Showing NP-Card for (2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid (NP0290684)

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Record Information

Version

2.0

Created at

2022-09-09 21:28:47 UTC

Updated at

2022-09-09 21:28:47 UTC

NP-MRD ID

NP0290684

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid

Description

(2E,4E,8E,10E)-dodecatetraenedioic acid, also known as (all-e)-dodeca-2,4,8,10-tetraenedioic acid, belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. (2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid is found in Trypanosoma brucei. Based on a literature review very few articles have been published on (2E,4E,8E,10E)-dodecatetraenedioic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 29  0  0  0  0  0  0  0  0999 V2000
   -6.7499   -1.7677    1.0182 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0933   -0.7019    1.0478 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7899    0.4786    1.2489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6455   -0.7221    0.8747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9143    0.3666    0.8978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4560    0.3223    0.7210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7511    1.4407    0.7502 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2868    1.5005    0.5832 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3129    0.1135    0.3728 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7742    0.3064    0.2196 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4621   -0.0377   -0.8454 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9145    0.1898   -0.9159 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6029   -0.1576   -1.9888 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0449    0.0525   -2.0950 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6277   -0.3004   -3.1375 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6909    0.6371   -1.0225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4231    1.3137    0.7909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1231   -1.6566    0.7190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3945    1.3217    1.0506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9226   -0.5983    0.5654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2662    2.3786    0.9054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0522    2.0861   -0.3173 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1977    1.9938    1.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1284   -0.5463    1.2521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1342   -0.3823   -0.5129 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3069    0.7610    1.0413 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9259   -0.4924   -1.6656 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4581    0.6431   -0.1017 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0357   -0.6173   -2.8080 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5198    0.2845   -0.0940 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
  2  1  2  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 16  1  0
 14 15  2  0
  3 17  1  0
  4 18  1  0
  5 19  1  0
  6 20  1  0
  7 21  1  0
  8 22  1  0
  8 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 16 30  1  0
M  END


  Mrv1652309092223282D          

 16 15  0  0  0  0            999 V2000
    7.0125    3.5724    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7750    4.2868    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7750    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0290684

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(=O)\C=C\C=C\CC\C=C\C=C\C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H14O4/c13-11(14)9-7-5-3-1-2-4-6-8-10-12(15)16/h3-10H,1-2H2,(H,13,14)(H,15,16)/b5-3+,6-4+,9-7+,10-8+

> <INCHI_KEY>
SXPCMUCUZSVRMB-MIIZMDLZSA-N

> <FORMULA>
C12H14O4

> <MOLECULAR_WEIGHT>
222.24

> <EXACT_MASS>
222.089208931

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
23.98343093932879

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,4E,8E,10E)-dodeca-2,4,8,10-tetraenedioic acid

> <JCHEM_LOGP>
2.4298700186666657

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
5.250173415569084

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.648113424241122

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
64.76480000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E,8E,10E)-dodeca-2,4,8,10-tetraenedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  O   UNK     0      13.090   6.668   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      11.550   6.668   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      10.780   8.002   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      10.780   5.335   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.470   4.001   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.160   2.667   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       0.000  -2.667   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      -2.310  -1.334   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

View in JSmol

Synonyms

Value	Source
(all-e)-Dodeca-2,4,8,10-tetraenedioic acid	ChEBI
(all-trans)-Dodeca-2,4,8,10-tetraenedioic acid	ChEBI
(all-e)-Dodeca-2,4,8,10-tetraenedioate	Generator
(all-trans)-Dodeca-2,4,8,10-tetraenedioate	Generator
(2E,4E,8E,10E)-Dodecatetraenedioate	Generator

Chemical Formula

C₁₂H₁₄O₄

Average Mass

222.2400 Da

Monoisotopic Mass

222.08921 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

OC(=O)\C=C\C=C\CC\C=C\C=C\C(O)=O

InChI Identifier

InChI=1S/C12H14O4/c13-11(14)9-7-5-3-1-2-4-6-8-10-12(15)16/h3-10H,1-2H2,(H,13,14)(H,15,16)/b5-3+,6-4+,9-7+,10-8+

InChI Key

SXPCMUCUZSVRMB-MIIZMDLZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trypanosoma brucei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Medium-chain fatty acids

Alternative Parents

Substituents

Medium-chain fatty acid
Unsaturated fatty acid
Dicarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

dodecatetraenedioic acid (CHEBI:73715 )
Dicarboxylic acids (LMFA01170008 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

7822603

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9543653

PDB ID

Not Available

ChEBI ID

73715

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid (NP0290684)

MOL for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

3D MOL for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

3D SDF for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

3D-SDF for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

PDB for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

3D PDB for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

SMILES for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

INCHI for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

Structure for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)

3D Structure for NP0290684 ((2e,4e,8e,10e)-dodeca-2,4,8,10-tetraenedioic acid)