NP-MRD: Showing NP-Card for (1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate (NP0289872)

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Record Information

Version

2.0

Created at

2022-09-09 20:16:13 UTC

Updated at

2022-09-09 20:16:13 UTC

NP-MRD ID

NP0289872

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate

Description

1-O-propanoyllycorine belongs to the class of organic compounds known as lycorine-type amaryllidaceae alkaloids. These are amaryllidaceae alkaloids compounds containing the lycorine skeleton, made up of a pyrrolo[d,e]phenanthridine ring system. (1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate is found in Lycoris traubii. (1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate was first documented in 2008 (PMID: 19013823). Based on a literature review very few articles have been published on 1-O-propanoyllycorine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092222162D          

 25 29  0  0  1  0            999 V2000
    2.4602   -4.0770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6317   -3.2700    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0186   -2.7180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2340   -2.9729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1902   -1.9110    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5771   -1.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7925   -1.6139    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6209   -2.4209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1794   -1.0619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1340    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1355    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486   -0.5520    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1355    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7780   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2629    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7780    1.0799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
 21 20  1  6  0  0  0
  6 21  1  0  0  0  0
 21 22  1  0  0  0  0
 10 22  1  0  0  0  0
 22 13  1  1  0  0  0
 18 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 17 25  1  0  0  0  0
M  END

     RDKit          3D

 46 50  0  0  0  0  0  0  0  0999 V2000
    4.2956    3.1597   -0.6971 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3199    2.7348    0.3751 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9173    1.3231    0.2568 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6155    0.3555    0.6460 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7062    1.0010   -0.3105 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2372   -0.2913   -0.4672 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2915   -0.7423   -1.9483 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5240   -0.3580   -2.4708 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3410   -2.2497   -1.8304 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3616   -2.7678   -1.1064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0592   -4.1305   -0.6781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8944   -3.7887    0.5694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5782   -2.5838    0.2341 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0608   -1.8162    1.3299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2011   -0.3641    1.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3465    0.3238    1.2717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4166    1.6590    0.9364 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3272    2.2546    0.3377 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1588    1.5534    0.0605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0880    0.2455    0.3884 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0161   -0.6942    0.2045 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6337   -1.8500   -0.5464 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7035    3.5863    0.1258 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0095    3.7946    0.5734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4485    2.5648    1.1035 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2420    2.5998   -0.5553 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9015    3.0239   -1.7030 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5561    4.2312   -0.4621 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4279    3.3926    0.4151 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8217    2.8379    1.3754 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0707   -0.9370   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4300   -0.3943   -2.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2137   -0.9908   -2.1298 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0737   -2.8749   -2.2697 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7576   -4.7581   -0.3260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7083   -4.6318   -1.4181 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5630   -4.6530    0.7663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2440   -3.6576    1.4505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3521   -1.9064    2.1781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0315   -2.1924    1.7379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2113   -0.1584    1.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3288    2.0177   -0.4015 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2432   -1.1015    1.2360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2225   -1.4329   -1.4194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7002    4.1292   -0.2185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0761    4.5375    1.4093 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 23  1  0
 23 24  1  0
 24 25  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 21  6  1  0
 22 10  1  0
 22 13  1  0
 20 15  1  0
 25 17  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  6 31  1  1
  7 32  1  6
  8 33  1  0
  9 34  1  0
 11 35  1  0
 11 36  1  0
 12 37  1  0
 12 38  1  0
 14 39  1  0
 14 40  1  0
 16 41  1  0
 24 45  1  0
 24 46  1  0
 19 42  1  0
 21 43  1  1
 22 44  1  6
M  END


  Mrv1652309092222162D          

 25 29  0  0  1  0            999 V2000
    2.4602   -4.0770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6317   -3.2700    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0186   -2.7180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2340   -2.9729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1902   -1.9110    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5771   -1.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7925   -1.6139    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6209   -2.4209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1794   -1.0619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1340    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3509    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1355    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8500    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486   -0.5520    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1355    0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7780   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2629    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7780    1.0799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
 21 20  1  6  0  0  0
  6 21  1  0  0  0  0
 21 22  1  0  0  0  0
 10 22  1  0  0  0  0
 22 13  1  1  0  0  0
 18 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 17 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0289872

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(=O)O[C@@H]1[C@@H](O)C=C2CCN3CC4=CC5=C(OCO5)C=C4[C@H]1[C@@H]23

> <INCHI_IDENTIFIER>
InChI=1S/C19H21NO5/c1-2-16(22)25-19-13(21)5-10-3-4-20-8-11-6-14-15(24-9-23-14)7-12(11)17(19)18(10)20/h5-7,13,17-19,21H,2-4,8-9H2,1H3/t13-,17-,18+,19+/m0/s1

> <INCHI_KEY>
UEHWEXPUCDLSTI-NOENWEJRSA-N

> <FORMULA>
C19H21NO5

> <MOLECULAR_WEIGHT>
343.379

> <EXACT_MASS>
343.14197278

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
35.896070914815155

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,17S,18S,19S)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0^{2,10}.0^{4,8}.0^{15,19}]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate

> <JCHEM_LOGP>
1.3039950676666665

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.764640490223194

> <JCHEM_PKA_STRONGEST_BASIC>
7.969005385186582

> <JCHEM_POLAR_SURFACE_AREA>
68.23

> <JCHEM_REFRACTIVITY>
89.96000000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,17S,18S,19S)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0^{2,10}.0^{4,8}.0^{15,19}]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       4.592  -7.610   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.913  -6.104   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.768  -5.074   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.304  -5.550   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       4.088  -3.567   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.944  -2.537   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.479  -3.013   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.159  -4.519   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.335  -1.982   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.655  -0.476   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.250   0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.655   2.016   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       2.120   1.540   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0       3.453   2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.454   1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.121  -0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.787   0.000   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.264  -1.030   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.120   0.000   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       8.919  -0.476   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       9.824   0.770   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       8.919   2.016   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   21                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   22                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   22                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   25                                                  
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   15   21                                                  
CONECT   21   20    6   22                                                  
CONECT   22   21   10   13                                                  
CONECT   23   18   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   17                                                       
MASTER        0    0    0    0    0    0    0    0   25    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₁NO₅

Average Mass

343.3790 Da

Monoisotopic Mass

343.14197 Da

IUPAC Name

(1S,17S,18S,19S)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0^{2,10}.0^{4,8}.0^{15,19}]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate

Traditional Name

(1S,17S,18S,19S)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0^{2,10}.0^{4,8}.0^{15,19}]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate

CAS Registry Number

Not Available

SMILES

CCC(=O)O[C@@H]1[C@@H](O)C=C2CCN3CC4=CC5=C(OCO5)C=C4[C@H]1[C@@H]23

InChI Identifier

InChI=1S/C19H21NO5/c1-2-16(22)25-19-13(21)5-10-3-4-20-8-11-6-14-15(24-9-23-14)7-12(11)17(19)18(10)20/h5-7,13,17-19,21H,2-4,8-9H2,1H3/t13-,17-,18+,19+/m0/s1

InChI Key

UEHWEXPUCDLSTI-NOENWEJRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lycoris traubii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lycorine-type amaryllidaceae alkaloids. These are amaryllidaceae alkaloids compounds containing the lycorine skeleton, made up of a pyrrolo[d,e]phenanthridine ring system.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Amaryllidaceae alkaloids

Sub Class

Lycorine-type amaryllidaceae alkaloids

Direct Parent

Lycorine-type amaryllidaceae alkaloids

Alternative Parents

Substituents

Lycorine skeleton
Benzoquinoline
Phenanthridine
Quinoline
Tetrahydroisoquinoline
Benzodioxole
Indole or derivatives
Aralkylamine
Benzenoid
N-alkylpyrrolidine
Pyrrolidine
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Amino acid or derivatives
Carboxylic acid ester
Acetal
Organoheterocyclic compound
Oxacycle
Azacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organopnictogen compound
Organonitrogen compound
Organooxygen compound
Carbonyl group
Organic oxygen compound
Organic nitrogen compound
Organic oxide
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.3	ChemAxon
pKa (Strongest Acidic)	13.76	ChemAxon
pKa (Strongest Basic)	7.97	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	68.23 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	89.96 m³·mol⁻¹	ChemAxon
Polarizability	35.9 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24693345

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44570339

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Toriizuka Y, Kinoshita E, Kogure N, Kitajima M, Ishiyama A, Otoguro K, Yamada H, Omura S, Takayama H: New lycorine-type alkaloid from Lycoris traubii and evaluation of antitrypanosomal and antimalarial activities of lycorine derivatives. Bioorg Med Chem. 2008 Dec 15;16(24):10182-9. doi: 10.1016/j.bmc.2008.10.061. Epub 2008 Oct 30. [PubMed:19013823 ]
LOTUS database [Link]

Showing NP-Card for (1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate (NP0289872)

MOL for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

3D MOL for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

3D SDF for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

3D-SDF for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

PDB for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

3D PDB for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

SMILES for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

INCHI for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

Structure for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)

3D Structure for NP0289872 ((1s,17s,18s,19s)-17-hydroxy-5,7-dioxa-12-azapentacyclo[10.6.1.0²,¹⁰.0⁴,⁸.0¹⁵,¹⁹]nonadeca-2,4(8),9,15-tetraen-18-yl propanoate)