NP-MRD: Showing NP-Card for [(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate (NP0289628)

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Record Information

Version

2.0

Created at

2022-09-09 19:54:38 UTC

Updated at

2022-09-09 19:54:38 UTC

NP-MRD ID

NP0289628

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate

Description

(13R)-Pimara-8,15-diene-1alpha,7alpha,14alpha,18-tetrol 7,14,18-triacetate belongs to the class of organic compounds known as 16-oxosteroids. These are steroid derivatives carrying a C=O group at the 16-position of the steroid skeleton. [(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate is found in Nepeta septemcrenata. Based on a literature review very few articles have been published on (13R)-Pimara-8,15-diene-1alpha,7alpha,14alpha,18-tetrol 7,14,18-triacetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092221542D          

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M  END

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  Mrv1652309092221542D          

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M  END
> <DATABASE_ID>
NP0289628

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)OC[C@]1(C)CC[C@H](O)[C@@]2(C)[C@H]1C[C@@H](OC(C)=O)C1=C2CC[C@](C)(C=C)[C@@H]1OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H38O7/c1-8-24(5)11-9-18-22(23(24)33-17(4)29)19(32-16(3)28)13-20-25(6,14-31-15(2)27)12-10-21(30)26(18,20)7/h8,19-21,23,30H,1,9-14H2,2-7H3/t19-,20+,21+,23-,24+,25+,26-/m1/s1

> <INCHI_KEY>
SZJIAOUOCZUDGP-BBBNJMSHSA-N

> <FORMULA>
C26H38O7

> <MOLECULAR_WEIGHT>
462.583

> <EXACT_MASS>
462.261753564

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
50.676280297129836

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(1R,4S,4aS,7R,8S,9R,10aS)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-1,2,3,4,4a,5,6,7,8,9,10,10a-dodecahydrophenanthren-1-yl]methyl acetate

> <JCHEM_LOGP>
2.3379134886666675

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.5943770234303855

> <JCHEM_POLAR_SURFACE_AREA>
99.13

> <JCHEM_REFRACTIVITY>
121.9727

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1R,4S,4aS,7R,8S,9R,10aS)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2H-phenanthren-1-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      10.121   0.307   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.673  -0.220   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.673   1.760   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.494   3.437   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       9.034   3.437   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.804   4.771   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       9.804   2.104   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.414   3.437   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       5.184   4.771   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.414   6.105   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.874   6.105   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.184   7.438   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.874  -1.897   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.510   3.643   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.742   2.920   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -2.102   2.197   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -3.408   3.013   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -4.768   2.290   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -3.354   4.552   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5    9                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   21                                                  
CONECT    8    7    9   14                                                  
CONECT    9    8    3   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    8   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   14   20                                                       
CONECT   20   19   21   27                                                  
CONECT   21   20    7   22   23                                             
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   20   28   29                                             
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   70    0
END

View in JSmol

Synonyms

Value	Source
(13R)-Pimara-8,15-diene-1a,7a,14a,18-tetrol 7,14,18-triacetate	Generator
(13R)-Pimara-8,15-diene-1a,7a,14a,18-tetrol 7,14,18-triacetic acid	Generator
(13R)-Pimara-8,15-diene-1alpha,7alpha,14alpha,18-tetrol 7,14,18-triacetic acid	Generator
(13R)-Pimara-8,15-diene-1α,7α,14α,18-tetrol 7,14,18-triacetate	Generator
(13R)-Pimara-8,15-diene-1α,7α,14α,18-tetrol 7,14,18-triacetic acid	Generator

Chemical Formula

C₂₆H₃₈O₇

Average Mass

462.5830 Da

Monoisotopic Mass

462.26175 Da

IUPAC Name

[(1R,4S,4aS,7R,8S,9R,10aS)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-1,2,3,4,4a,5,6,7,8,9,10,10a-dodecahydrophenanthren-1-yl]methyl acetate

Traditional Name

[(1R,4S,4aS,7R,8S,9R,10aS)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2H-phenanthren-1-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)OC[C@]1(C)CC[C@H](O)[C@@]2(C)[C@H]1C[C@@H](OC(C)=O)C1=C2CC[C@](C)(C=C)[C@@H]1OC(C)=O

InChI Identifier

InChI=1S/C26H38O7/c1-8-24(5)11-9-18-22(23(24)33-17(4)29)19(32-16(3)28)13-20-25(6,14-31-15(2)27)12-10-21(30)26(18,20)7/h8,19-21,23,30H,1,9-14H2,2-7H3/t19-,20+,21+,23-,24+,25+,26-/m1/s1

InChI Key

SZJIAOUOCZUDGP-BBBNJMSHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nepeta septemcrenata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 16-oxosteroids. These are steroid derivatives carrying a C=O group at the 16-position of the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Oxosteroids

Direct Parent

16-oxosteroids

Alternative Parents

Substituents

Diterpenoid
Pimarane diterpenoid
1-hydroxysteroid
16-oxosteroid
Hydroxysteroid
Hydrophenanthrene
Phenanthrene
Tricarboxylic acid or derivatives
Cyclic alcohol
Carboxylic acid ester
Secondary alcohol
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Organooxygen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.34	ChemAxon
pKa (Strongest Basic)	-0.59	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	99.13 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	121.97 m³·mol⁻¹	ChemAxon
Polarizability	50.68 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8703438

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10528042

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate (NP0289628)

MOL for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

3D MOL for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

3D SDF for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

3D-SDF for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

PDB for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

3D PDB for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

SMILES for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

INCHI for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

Structure for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)

3D Structure for NP0289628 ([(1r,4s,4as,7r,8s,9r,10as)-8,9-bis(acetyloxy)-7-ethenyl-4-hydroxy-1,4a,7-trimethyl-3,4,5,6,8,9,10,10a-octahydro-2h-phenanthren-1-yl]methyl acetate)