NP-MRD: Showing NP-Card for magnoloside b (NP0289519)

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Record Information

Version

2.0

Created at

2022-09-09 19:44:30 UTC

Updated at

2022-09-09 19:44:30 UTC

NP-MRD ID

NP0289519

Secondary Accession Numbers

None

Natural Product Identification

Common Name

magnoloside b

Description

Magnoloside B belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. magnoloside b is found in Magnolia obovata. magnoloside b was first documented in 2015 (PMID: 25085894). Based on a literature review a small amount of articles have been published on Magnoloside B (PMID: 35908283) (PMID: 31602929) (PMID: 30989858) (PMID: 30316138).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092221442D          

 55 59  0  0  0  0            999 V2000
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   -5.0013   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309092221442D          

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 52 54  1  0  0  0  0
  2 54  1  0  0  0  0
 54 55  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0289519

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1OC(OC2C(OCCC3=CC=C(O)C(O)=C3)OC(COC3OC(CO)C(O)C(O)C3O)C(O)C2OC(=O)\C=C\C2=CC=C(O)C(O)=C2)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C35H46O20/c1-14-24(42)27(45)30(48)34(51-14)55-32-31(54-23(41)7-4-15-2-5-17(37)19(39)10-15)26(44)22(13-50-33-29(47)28(46)25(43)21(12-36)52-33)53-35(32)49-9-8-16-3-6-18(38)20(40)11-16/h2-7,10-11,14,21-22,24-40,42-48H,8-9,12-13H2,1H3/b7-4+

> <INCHI_KEY>
MGCIVWNKCIWQHX-QPJJXVBHSA-N

> <FORMULA>
C35H46O20

> <MOLECULAR_WEIGHT>
786.733

> <EXACT_MASS>
786.258243881

> <JCHEM_ACCEPTOR_COUNT>
19

> <JCHEM_ATOM_COUNT>
101

> <JCHEM_AVERAGE_POLARIZABILITY>
75.64526016585108

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
12

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-4-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate

> <JCHEM_LOGP>
-0.9514102853333318

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.643122071038967

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.010184802062902

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6765067056187952

> <JCHEM_POLAR_SURFACE_AREA>
324.44

> <JCHEM_REFRACTIVITY>
180.81640000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-4-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.668  -5.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -8.002  -7.700   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -8.002  -9.240   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -9.336 -10.010   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0     -10.669  -9.240   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -10.669  -7.700   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -9.336  -6.930   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -8.002   0.000   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -8.002   1.540   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -5.335   0.000   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0     -12.003  -6.930   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0     -13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -14.670  -6.930   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0     -14.670  -5.390   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0     -16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0     -17.338  -5.390   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0     -18.672  -4.620   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -20.005  -5.390   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0     -21.339  -4.620   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0     -18.672  -3.080   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0     -20.005  -2.310   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0     -17.338  -2.310   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0     -17.338  -0.770   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0     -16.004  -3.080   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0     -14.670  -2.310   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0     -13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0     -14.670 -10.010   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0     -12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0     -12.003 -11.550   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0     -13.337 -12.320   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0     -14.670 -11.550   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0     -13.337 -13.860   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -14.670 -14.630   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -14.670 -16.170   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -13.337 -16.940   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -13.337 -18.480   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -14.670 -19.250   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0     -14.670 -20.790   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0     -16.004 -18.480   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0     -17.338 -19.250   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0     -16.004 -16.940   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -6.668 -10.010   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      -6.668 -11.550   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -4.001 -10.010   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0      -5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      -4.001  -6.930   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   54                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   50                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   36                                                  
CONECT    7    6    8   19                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   18                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   11                                                       
CONECT   19    7   20                                                       
CONECT   20   19   21   34                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   32                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   25   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   23   33                                                  
CONECT   33   32                                                            
CONECT   34   20   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34    6   37                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43   49                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46   47                                                  
CONECT   46   45                                                            
CONECT   47   45   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   42                                                       
CONECT   50    4   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   53   54                                                  
CONECT   53   52                                                            
CONECT   54   52    2   55                                                  
CONECT   55   54                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  118    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₅H₄₆O₂₀

Average Mass

786.7330 Da

Monoisotopic Mass

786.25824 Da

IUPAC Name

2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-4-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate

Traditional Name

2-[2-(3,4-dihydroxyphenyl)ethoxy]-5-hydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)-3-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-4-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate

CAS Registry Number

Not Available

SMILES

CC1OC(OC2C(OCCC3=CC=C(O)C(O)=C3)OC(COC3OC(CO)C(O)C(O)C3O)C(O)C2OC(=O)\C=C\C2=CC=C(O)C(O)=C2)C(O)C(O)C1O

InChI Identifier

InChI=1S/C35H46O20/c1-14-24(42)27(45)30(48)34(51-14)55-32-31(54-23(41)7-4-15-2-5-17(37)19(39)10-15)26(44)22(13-50-33-29(47)28(46)25(43)21(12-36)52-33)53-35(32)49-9-8-16-3-6-18(38)20(40)11-16/h2-7,10-11,14,21-22,24-40,42-48H,8-9,12-13H2,1H3/b7-4+

InChI Key

MGCIVWNKCIWQHX-QPJJXVBHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Magnolia obovata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
Cinnamic acid or derivatives
Coumaric acid or derivatives
Hydroxycinnamic acid or derivatives
Cinnamic acid ester
Glycosyl compound
O-glycosyl compound
Tyrosol derivative
Catechol
Styrene
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Fatty acid ester
Phenol
Monocyclic benzene moiety
Oxane
Benzenoid
Fatty acyl
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Carboxylic acid ester
Polyol
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Acetal
Carbonyl group
Primary alcohol
Alcohol
Organic oxide
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

oligosaccharide (CHEBI:81269 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.95	ChemAxon
pKa (Strongest Acidic)	9.01	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	19	ChemAxon
Hydrogen Donor Count	12	ChemAxon
Polar Surface Area	324.44 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	180.82 m³·mol⁻¹	ChemAxon
Polarizability	75.65 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

30791600

KEGG Compound ID

C17679

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14018784

PDB ID

Not Available

ChEBI ID

81269

Good Scents ID

Not Available

References

General References

Zhang J, Li H, Hou L, Sun J, Wang W, Li H, Yang W, Rong P, Nan T, Kang L, Yang B: Pharmacokinetics and metabolites of glycosides and lignans of the stem bark of Magnolia officinalis in functional dyspepsia and normal rats using liquid chromatography-tandem mass spectrometry. J Sep Sci. 2022 Oct;45(19):3663-3678. doi: 10.1002/jssc.202100982. Epub 2022 Aug 8. [PubMed:35908283 ]
Xue ZZ, Zhang RX, Yang B: [Geo-herbalism study of Magnoliae Officinalis Cortex]. Zhongguo Zhong Yao Za Zhi. 2019 Sep;44(17):3601-3607. doi: 10.19540/j.cnki.cjcmm.20190701.104. [PubMed:31602929 ]
Jing WG, Zhang Q, Deng Z, Wang JY, Sun XB, Lan QS: [Quality evaluation of Magnoliae Officinalis Cortex based on combinative method of fingerprint,quantitative analysis of multicomponents and chemometrics]. Zhongguo Zhong Yao Za Zhi. 2019 Mar;44(5):975-982. doi: 10.19540/j.cnki.cjcmm.20181226.018. [PubMed:30989858 ]
Zhang M, Cheng S, Liang Y, Mu Y, Yan H, Liu Q, Geng Y, Wang X, Zhao H: Rapid purification of antioxidants from Magnolia officinalis by semi-prep-HPLC with a two-step separation strategy guided by on-line HPLC-radical scavenging detection. J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Nov 15;1100-1101:140-147. doi: 10.1016/j.jchromb.2018.09.030. Epub 2018 Oct 3. [PubMed:30316138 ]
Yan R, Yu S, Liu H, Xue Z, Yang B: An HPLC-DAD method for simultaneous quantitative determination of four active hydrophilic compounds in Magnoliae officinalis cortex. J Chromatogr Sci. 2015 Apr;53(4):598-602. doi: 10.1093/chromsci/bmu091. Epub 2014 Aug 1. [PubMed:25085894 ]
LOTUS database [Link]

Showing NP-Card for magnoloside b (NP0289519)

MOL for NP0289519 (magnoloside b)

3D MOL for NP0289519 (magnoloside b)

3D SDF for NP0289519 (magnoloside b)

3D-SDF for NP0289519 (magnoloside b)

PDB for NP0289519 (magnoloside b)

3D PDB for NP0289519 (magnoloside b)

SMILES for NP0289519 (magnoloside b)

INCHI for NP0289519 (magnoloside b)

Structure for NP0289519 (magnoloside b)

3D Structure for NP0289519 (magnoloside b)