NP-MRD: Showing NP-Card for (6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one (NP0289486)

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Record Information

Version

2.0

Created at

2022-09-09 19:41:46 UTC

Updated at

2022-09-09 19:41:46 UTC

NP-MRD ID

NP0289486

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one

Description

(6R,7R,8R)-8-Methoxygoniodiol, also known as 8-methoxygoniodiol, belongs to the class of organic compounds known as benzylethers. These are aromatic ethers with the general formula ROCR' (R = alkyl, aryl; R'=benzene). (6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one is found in Goniothalamus amuyon. (6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one was first documented in 2003 (PMID: 12713398). Based on a literature review very few articles have been published on (6R,7R,8R)-8-Methoxygoniodiol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 35  0  0  0  0  0  0  0  0999 V2000
    0.6697   -2.5842   -1.6321 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3281   -1.6641   -0.6531 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8662   -0.3994   -0.9219 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7066    0.0236    0.1844 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6020   -0.9331    0.6818 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4364   -0.6391    1.7235 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4555    0.5769    2.3373 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5664    1.5318    1.8463 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7288    1.2301    0.7974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2565    0.5334   -1.3018 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2440    1.7605   -1.6062 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3785    0.5284   -0.3097 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5892    1.2620   -0.7513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7135    1.0831    0.1527 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8535   -0.0027    0.8825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8641   -1.0629    0.7961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9770   -2.1070    1.4802 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8057   -0.8342   -0.0851 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2293   -2.1721   -2.5855 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3110   -3.5848   -1.4057 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7629   -2.5245   -1.8021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4836   -0.4950   -1.8368 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6647   -1.9248    0.2699 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1228   -1.3934    2.0944 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1142    0.8071    3.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5788    2.5097    2.3368 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0722    2.0023    0.4744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6839    0.1051   -2.2580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3798    2.3918   -2.0180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0379    0.8879    0.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3170    2.3602   -0.7436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8711    0.9957   -1.7956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5052    1.8460    0.2734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7101   -0.1143    1.5551 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
 18 12  1  0
  9  4  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  6
 10 28  1  6
 11 29  1  0
 12 30  1  1
 13 31  1  0
 13 32  1  0
 14 33  1  0
 15 34  1  0
  5 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
M  END


  Mrv1652309092221412D          

 18 19  0  0  1  0            999 V2000
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  3 10  1  0  0  0  0
 10 11  1  6  0  0  0
 12 10  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 12 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0289486

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@H]([C@H](O)[C@H]1CC=CC(=O)O1)C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C14H16O4/c1-17-14(10-6-3-2-4-7-10)13(16)11-8-5-9-12(15)18-11/h2-7,9,11,13-14,16H,8H2,1H3/t11-,13-,14-/m1/s1

> <INCHI_KEY>
OGXADNXQFFRXMG-MRVWCRGKSA-N

> <FORMULA>
C14H16O4

> <MOLECULAR_WEIGHT>
248.278

> <EXACT_MASS>
248.104858995

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
25.478934586761525

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(6R)-6-[(1R,2R)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydro-2H-pyran-2-one

> <JCHEM_LOGP>
1.991973600666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.88772778381642

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.073027832296209

> <JCHEM_PKA_STRONGEST_BASIC>
-3.640258585509512

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
66.9614

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(6R)-6-[(1R,2R)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.669  -0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       9.336  -2.310   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   10                                                  
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    4                                                       
CONECT   10    3   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   18                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   12                                                       
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

View in JSmol

Synonyms

Value	Source
8-Methoxygoniodiol	MeSH

Chemical Formula

C₁₄H₁₆O₄

Average Mass

248.2780 Da

Monoisotopic Mass

248.10486 Da

IUPAC Name

(6R)-6-[(1R,2R)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydro-2H-pyran-2-one

Traditional Name

(6R)-6-[(1R,2R)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one

CAS Registry Number

Not Available

SMILES

CO[C@@H]([C@H](O)[C@H]1CC=CC(=O)O1)C1=CC=CC=C1

InChI Identifier

InChI=1S/C14H16O4/c1-17-14(10-6-3-2-4-7-10)13(16)11-8-5-9-12(15)18-11/h2-7,9,11,13-14,16H,8H2,1H3/t11-,13-,14-/m1/s1

InChI Key

OGXADNXQFFRXMG-MRVWCRGKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Goniothalamus amuyon	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzylethers. These are aromatic ethers with the general formula ROCR' (R = alkyl, aryl; R'=benzene).

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzylethers

Direct Parent

Benzylethers

Alternative Parents

Substituents

Benzylether
Dihydropyranone
Pyran
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Carboxylic acid ester
Lactone
Secondary alcohol
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.99	ChemAxon
pKa (Strongest Acidic)	13.07	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	66.96 m³·mol⁻¹	ChemAxon
Polarizability	25.48 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00044408

Chemspider ID

23339574

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44566796

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Lan YH, Chang FR, Yu JH, Yang YL, Chang YL, Lee SJ, Wu YC: Cytotoxic styrylpyrones from Goniothalamus amuyon. J Nat Prod. 2003 Apr;66(4):487-90. doi: 10.1021/np020441r. [PubMed:12713398 ]
LOTUS database [Link]

Showing NP-Card for (6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one (NP0289486)

MOL for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

3D MOL for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

3D SDF for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

3D-SDF for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

PDB for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

3D PDB for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

SMILES for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

INCHI for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

Structure for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)

3D Structure for NP0289486 ((6r)-6-[(1r,2r)-1-hydroxy-2-methoxy-2-phenylethyl]-5,6-dihydropyran-2-one)