Np mrd loader

Record Information
Version2.0
Created at2022-09-09 19:34:08 UTC
Updated at2022-09-09 19:34:08 UTC
NP-MRD IDNP0289397
Secondary Accession NumbersNone
Natural Product Identification
Common Name(4s,5s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-5-hydroxy-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid
DescriptionManzacidin B belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. (4s,5s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-5-hydroxy-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid was first documented in 2007 (PMID: 17411060). Based on a literature review a small amount of articles have been published on Manzacidin B (PMID: 31850753) (PMID: 22315965).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC12H14BrN3O5
Average Mass360.1640 Da
Monoisotopic Mass359.01168 Da
IUPAC Name(4S,5S,6R)-6-[(4-bromo-1H-pyrrole-2-carbonyloxy)methyl]-5-hydroxy-6-methyl-1,4,5,6-tetrahydropyrimidine-4-carboxylic acid
Traditional Name(4S,5S,6R)-6-[(4-bromo-1H-pyrrole-2-carbonyloxy)methyl]-5-hydroxy-6-methyl-4,5-dihydro-1H-pyrimidine-4-carboxylic acid
CAS Registry NumberNot Available
SMILES
C[C@]1(COC(=O)C2=CC(Br)=CN2)NC=N[C@@H]([C@@H]1O)C(O)=O
InChI Identifier
InChI=1S/C12H14BrN3O5/c1-12(9(17)8(10(18)19)15-5-16-12)4-21-11(20)7-2-6(13)3-14-7/h2-3,5,8-9,14,17H,4H2,1H3,(H,15,16)(H,18,19)/t8-,9-,12+/m0/s1
InChI KeyRMRGGLUETWXFCH-HOTUBEGUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid or derivatives
  • Hydropyrimidine carboxylic acid derivative
  • Pyrrole-2-carboxylic acid or derivatives
  • Beta-hydroxy acid
  • Aryl bromide
  • Aryl halide
  • Hydropyrimidine
  • 1,4,5,6-tetrahydropyrimidine
  • Hydroxy acid
  • Substituted pyrrole
  • Heteroaromatic compound
  • Pyrrole
  • Carboxylic acid ester
  • Secondary alcohol
  • Amidine
  • Formamidine
  • Carboxylic acid amidine
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Monocarboxylic acid or derivatives
  • Carboximidamide
  • Amine
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organic oxide
  • Carbonyl group
  • Organohalogen compound
  • Organobromide
  • Organonitrogen compound
  • Organooxygen compound
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.4ChemAxon
pKa (Strongest Acidic)2.01ChemAxon
pKa (Strongest Basic)7.31ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area124.01 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity74.33 m³·mol⁻¹ChemAxon
Polarizability30.57 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID17343492
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16215854
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Araki Y, Miyoshi N, Morimoto K, Kudoh T, Mizoguchi H, Sakakura A: Formal Total Synthesis of Manzacidin B via Sequential Diastereodivergent Henry Reaction. J Org Chem. 2020 Jan 17;85(2):798-805. doi: 10.1021/acs.joc.9b02811. Epub 2019 Dec 31. [PubMed:31850753 ]
  2. Sankar K, Rahman H, Das PP, Bhimireddy E, Sridhar B, Mohapatra DK: Practical syntheses of proposed and revised manzacidin B and their congeners. Org Lett. 2012 Feb 17;14(4):1082-5. doi: 10.1021/ol203466m. Epub 2012 Feb 8. [PubMed:22315965 ]
  3. Shinada T, Ikebe E, Oe K, Namba K, Kawasaki M, Ohfune Y: Synthesis and absolute structure of manzacidin B. Org Lett. 2007 Apr 26;9(9):1765-7. doi: 10.1021/ol0704789. Epub 2007 Apr 6. [PubMed:17411060 ]
  4. LOTUS database [Link]