NP-MRD: Showing NP-Card for (2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid (NP0289372)

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Record Information

Version

2.0

Created at

2022-09-09 19:31:56 UTC

Updated at

2022-09-09 19:31:56 UTC

NP-MRD ID

NP0289372

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid

Description

Garcihombronane H belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid is found in Garcinia hombroniana. Based on a literature review very few articles have been published on garcihombronane H.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092221312D          

 34 37  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652309092221312D          

 34 37  0  0  1  0            999 V2000
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    1.2973    1.3502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0648    3.7300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5329    4.3607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8769    3.8752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  1  0  0  0
  8  6  1  6  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 22 21  1  1  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 22 30  1  0  0  0  0
 17 30  1  0  0  0  0
 30 31  1  1  0  0  0
  2 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0289372

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CC\C=C(/C)C(O)=O)[C@]1(C)CC[C@@]2(C)[C@@H]3CC[C@H]4C(C)(C)[C@H](O)CC[C@]4(C)[C@@]3(O)CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C30H48O4/c1-19(25(32)33)9-8-10-20(2)27(5)17-18-28(6)22(27)13-16-30(34)23(28)12-11-21-26(3,4)24(31)14-15-29(21,30)7/h9,13,20-21,23-24,31,34H,8,10-12,14-18H2,1-7H3,(H,32,33)/b19-9+/t20-,21+,23+,24-,27+,28-,29+,30-/m1/s1

> <INCHI_KEY>
GBEVCPIJOYQRAL-DHEFQOKPSA-N

> <FORMULA>
C30H48O4

> <MOLECULAR_WEIGHT>
472.71

> <EXACT_MASS>
472.355260026

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
55.90583462469857

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,6R)-6-[(1R,2S,5R,7S,10S,11S,14S)-1,5-dihydroxy-2,6,6,11,14-pentamethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-15-en-14-yl]-2-methylhept-2-enoic acid

> <JCHEM_LOGP>
5.860676909666669

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
19.48931837187146

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.734001882862063

> <JCHEM_PKA_STRONGEST_BASIC>
0.5072366776432976

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
137.9796

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2E,6R)-6-[(1R,2S,5R,7S,10S,11S,14S)-1,5-dihydroxy-2,6,6,11,14-pentamethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-15-en-14-yl]-2-methylhept-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      15.524   4.337   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.531   5.514   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      13.015   5.243   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.492   3.795   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.976   3.524   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.453   2.075   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.445   0.898   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.937   1.804   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.826   3.340   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.365   0.325   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.090  -0.539   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.874   0.406   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.505  -1.089   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.398   1.854   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.405   3.032   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.889   2.761   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.366   1.312   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       3.373   2.489   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       5.358   0.135   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.835  -1.314   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.319  -1.585   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.326  -0.407   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.810  -0.678   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.341  -2.124   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.521  -1.452   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.182   0.499   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -1.698   0.228   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       0.341   1.947   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.857   2.218   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.850   1.041   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.422   2.520   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      15.054   6.963   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      14.062   8.140   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      16.570   7.234   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   32                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   14                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   19                                             
CONECT   13   12                                                            
CONECT   14   12    8   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   30                                             
CONECT   18   17                                                            
CONECT   19   17   12   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   30                                                  
CONECT   23   22   24   25   26                                             
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   23   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   22   17   31                                             
CONECT   31   30                                                            
CONECT   32    2   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₈O₄

Average Mass

472.7100 Da

Monoisotopic Mass

472.35526 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H](CC\C=C(/C)C(O)=O)[C@]1(C)CC[C@@]2(C)[C@@H]3CC[C@H]4C(C)(C)[C@H](O)CC[C@]4(C)[C@@]3(O)CC=C12

InChI Identifier

InChI=1S/C30H48O4/c1-19(25(32)33)9-8-10-20(2)27(5)17-18-28(6)22(27)13-16-30(34)23(28)12-11-21-26(3,4)24(31)14-15-29(21,30)7/h9,13,20-21,23-24,31,34H,8,10-12,14-18H2,1-7H3,(H,32,33)/b19-9+/t20-,21+,23+,24-,27+,28-,29+,30-/m1/s1

InChI Key

GBEVCPIJOYQRAL-DHEFQOKPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Garcinia hombroniana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Steroid acid
3-hydroxysteroid
Hydroxysteroid
14-alpha-methylsteroid
3-alpha-hydroxysteroid
Steroid
Medium-chain fatty acid
Methyl-branched fatty acid
Branched fatty acid
Hydroxy fatty acid
Fatty acid
Fatty acyl
Unsaturated fatty acid
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Organooxygen compound
Organic oxide
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23326674

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44559182

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid (NP0289372)

MOL for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

3D MOL for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

3D SDF for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

3D-SDF for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

PDB for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

3D PDB for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

SMILES for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

INCHI for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

Structure for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)

3D Structure for NP0289372 ((2e,6r)-6-[(1s,3as,3bs,5as,7r,9as,9br)-7,9b-dihydroxy-1,3a,6,6,9a-pentamethyl-2h,3h,3bh,4h,5h,5ah,7h,8h,9h,10h-cyclopenta[a]phenanthren-1-yl]-2-methylhept-2-enoic acid)