NP-MRD: Showing NP-Card for 3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione (NP0288552)

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Record Information

Version

2.0

Created at

2022-09-09 18:18:14 UTC

Updated at

2022-09-09 18:18:14 UTC

NP-MRD ID

NP0288552

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione

Description

Chaetoglobinol B belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position. 3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione is found in Chaetomium elatum. Based on a literature review very few articles have been published on Chaetoglobinol B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092220182D          

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M  END

     RDKit          3D

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  Mrv1652309092220182D          

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 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 24 30  1  0  0  0  0
 30 31  2  0  0  0  0
 18 31  1  0  0  0  0
 21 31  1  0  0  0  0
 17 32  2  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 11 34  1  0  0  0  0
 34 35  2  0  0  0  0
 10 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
  9 38  1  0  0  0  0
 38 39  2  0  0  0  0
  6 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0288552

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1=CC=C2C(NC=C2C2(O)C(=O)C(O)=C(C3=CNC4=CC=C(CC=C(C)C)C=C34)C(=O)C2=O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C32H30N2O5/c1-17(2)5-7-19-10-12-25-22(13-19)23(15-33-25)27-28(35)30(37)32(39,31(38)29(27)36)24-16-34-26-14-20(8-6-18(3)4)9-11-21(24)26/h5-6,9-16,33-35,39H,7-8H2,1-4H3

> <INCHI_KEY>
KNHSUZDZQMWGRE-UHFFFAOYSA-N

> <FORMULA>
C32H30N2O5

> <MOLECULAR_WEIGHT>
522.601

> <EXACT_MASS>
522.215472074

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
58.979502181524715

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]cyclohex-5-ene-1,2,4-trione

> <JCHEM_LOGP>
6.912491228666664

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
10.842449978121607

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.53646454737324

> <JCHEM_PKA_STRONGEST_BASIC>
-4.77070101446983

> <JCHEM_POLAR_SURFACE_AREA>
123.24999999999999

> <JCHEM_REFRACTIVITY>
153.7492

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]cyclohex-5-ene-1,2,4-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      17.242  -6.798   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      17.242  -5.258   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      18.575  -4.488   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      15.908  -4.488   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      15.908  -2.948   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.574  -2.178   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.574  -0.638   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.241   0.132   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.907  -0.638   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.442  -0.162   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.967   1.303   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      11.492   1.517   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       8.607   0.580   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       8.553  -0.959   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       7.301   1.396   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.941   0.673   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       7.355   2.935   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.049   3.751   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.621   3.174   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0       3.631   4.354   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       4.447   5.660   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.022   7.140   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.092   8.248   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.586   7.875   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.656   8.983   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.232  10.463   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.301  11.571   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.877  13.051   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       9.796  11.199   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       7.011   6.395   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.941   5.287   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       8.714   3.658   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       8.768   5.197   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      10.020   2.842   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      11.380   3.565   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       9.537  -1.408   0.000  0.00  0.00           C+0
HETATM   37  N   UNK     0      10.442  -2.654   0.000  0.00  0.00           N+0
HETATM   38  C   UNK     0      11.907  -2.178   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      13.241  -2.948   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   39                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   38                                                  
CONECT   10    9   11   36                                                  
CONECT   11   10   12   13   34                                             
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   32                                                  
CONECT   18   17   19   31                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   31                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   30                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   24   31                                                       
CONECT   31   30   18   21                                                  
CONECT   32   17   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   11   35                                                  
CONECT   35   34                                                            
CONECT   36   10   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37    9   39                                                  
CONECT   39   38    6                                                       
MASTER        0    0    0    0    0    0    0    0   39    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₂H₃₀N₂O₅

Average Mass

522.6010 Da

Monoisotopic Mass

522.21547 Da

IUPAC Name

3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]cyclohex-5-ene-1,2,4-trione

Traditional Name

3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1H-indol-3-yl]cyclohex-5-ene-1,2,4-trione

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=CC=C2C(NC=C2C2(O)C(=O)C(O)=C(C3=CNC4=CC=C(CC=C(C)C)C=C34)C(=O)C2=O)=C1

InChI Identifier

InChI=1S/C32H30N2O5/c1-17(2)5-7-19-10-12-25-22(13-19)23(15-33-25)27-28(35)30(37)32(39,31(38)29(27)36)24-16-34-26-14-20(8-6-18(3)4)9-11-21(24)26/h5-6,9-16,33-35,39H,7-8H2,1-4H3

InChI Key

KNHSUZDZQMWGRE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chaetomium elatum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-alkylindoles. 3-Alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 3-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indoles

Direct Parent

3-alkylindoles

Alternative Parents

Substituents

3-alkylindole
Quinone
M-benzoquinone
Cyclohexenone
Benzenoid
Substituted pyrrole
Acyloin
Heteroaromatic compound
Vinylogous acid
Tertiary alcohol
Pyrrole
Cyclic ketone
Ketone
Azacycle
Enol
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.91	ChemAxon
pKa (Strongest Acidic)	4.54	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	123.25 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	153.75 m³·mol⁻¹	ChemAxon
Polarizability	58.98 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146683293

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione (NP0288552)

MOL for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

3D MOL for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

3D SDF for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

3D-SDF for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

PDB for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

3D PDB for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

SMILES for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

INCHI for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

Structure for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)

3D Structure for NP0288552 (3,5-dihydroxy-6-[5-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]-3-[6-(3-methylbut-2-en-1-yl)-1h-indol-3-yl]cyclohex-5-ene-1,2,4-trione)