NP-MRD: Showing NP-Card for tuduic acid (NP0288497)

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Record Information

Version

2.0

Created at

2022-09-09 18:13:16 UTC

Updated at

2022-09-09 18:13:17 UTC

NP-MRD ID

NP0288497

Secondary Accession Numbers

None

Natural Product Identification

Common Name

tuduic acid

Description

Tsuzuic acid, also known as tsuzuate or 4-tetradecenoate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. tuduic acid is found in Lindera umbellata. tuduic acid was first documented in 1966 (PMID: 17805664). Tsuzuic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 41  0  0  0  0  0  0  0  0999 V2000
   -5.4696   -0.1867    1.5330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3625   -0.9614    0.8508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3636   -0.7552   -0.6379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1799    0.6678   -1.0380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8812    1.2731   -0.5573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7259    0.4793   -1.1364 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3988    1.0560   -0.6804 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6789    0.2059   -1.3032 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0508    0.7432   -0.8849 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1809    0.6955    0.5838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0906    0.0164    1.2610 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1175   -0.8019    0.6166 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5301   -0.3256    0.9576 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4789   -1.2185    0.2570 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1016   -2.1697   -0.4656 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8317   -0.9946    0.4055 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6801   -0.6746    2.4950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1105    0.8494    1.7215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3805   -0.2104    0.8990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3821   -0.6439    1.2446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5290   -2.0308    1.1064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3857   -1.0842   -0.9882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5796   -1.3927   -1.0865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1925    0.7025   -2.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0429    1.3020   -0.7359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7995    2.3362   -0.8862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8362    1.1799    0.5420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7799   -0.5357   -0.6957 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7483    0.4244   -2.2356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3740    0.9076    0.4244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2451    2.0883   -0.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5817   -0.8674   -1.0727 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6228    0.3814   -2.4110 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7987    0.2049   -1.4578 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0036    1.8340   -1.2063 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4666    1.2733    1.1678 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0848    0.0606    2.3561 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0773   -1.8405    1.0790 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9928   -0.9923   -0.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6915   -0.4350    2.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6657    0.7415    0.7149 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4011   -1.3022    1.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 16  1  0
 14 15  2  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  0
  6 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
 10 36  1  0
 11 37  1  0
 12 38  1  0
 12 39  1  0
 13 40  1  0
 13 41  1  0
 16 42  1  0
M  END

  Mrv0541 02231220202D          

 16 15  0  0  0  0            999 V2000
   21.7883  -13.2460    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.0738  -14.4835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.3594  -16.5460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6449  -16.9585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.0738  -16.9585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9304  -16.5460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7883  -16.5460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.2159  -16.9585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5028  -16.9585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5015  -16.5460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2172  -16.5460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7870  -16.9585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.2172  -15.7210    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5028  -15.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.5028  -14.4835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.7883  -14.0710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 16  1  0  0  0  0
  2 16  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  7  1  0  0  0  0
  6  8  1  0  0  0  0
  7  9  1  0  0  0  0
  8 10  1  0  0  0  0
  9 11  1  0  0  0  0
 10 12  1  0  0  0  0
 11 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0288497

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCC\C=C/CCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C14H26O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14(15)16/h10-11H,2-9,12-13H2,1H3,(H,15,16)/b11-10-

> <INCHI_KEY>
CUVLOCDGQCUQSI-KHPPLWFESA-N

> <FORMULA>
C14H26O2

> <MOLECULAR_WEIGHT>
226.355

> <EXACT_MASS>
226.193280076

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
28.769530345074465

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4Z)-tetradec-4-enoic acid

> <ALOGPS_LOGP>
5.84

> <JCHEM_LOGP>
5.005523791

> <ALOGPS_LOGS>
-5.12

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.881543944064292

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
68.9982

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.71e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4Z)-tetradec-4-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-FEB-12         0                                  
HETATM    1  O   UNK     0      40.671 -24.726   0.000  0.00  0.00           O+0
HETATM    2  O   UNK     0      39.338 -27.036   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      38.004 -30.886   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      36.670 -31.656   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      39.338 -31.656   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      35.337 -30.886   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      40.671 -30.886   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      34.003 -31.656   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      42.005 -31.656   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      32.669 -30.886   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      43.339 -30.886   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      31.336 -31.656   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      43.339 -29.346   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      42.005 -28.576   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      42.005 -27.036   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      40.671 -26.266   0.000  0.00  0.00           C+0
CONECT    1   16                                                            
CONECT    2   16                                                            
CONECT    3    4    5                                                       
CONECT    4    3    6                                                       
CONECT    5    3    7                                                       
CONECT    6    4    8                                                       
CONECT    7    5    9                                                       
CONECT    8    6   10                                                       
CONECT    9    7   11                                                       
CONECT   10    8   12                                                       
CONECT   11    9   13                                                       
CONECT   12   10                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16    1    2   15                                                  
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

View in JSmol

Synonyms

Value	Source
Tsuzuate	Generator
4-Tetradecenoate	HMDB
4-Tetradecenoic acid	HMDB
Tuduic acid	HMDB

Chemical Formula

C₁₄H₂₆O₂

Average Mass

226.3550 Da

Monoisotopic Mass

226.19328 Da

IUPAC Name

(4Z)-tetradec-4-enoic acid

Traditional Name

(4Z)-tetradec-4-enoic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCC\C=C/CCC(O)=O

InChI Identifier

InChI=1S/C14H26O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14(15)16/h10-11H,2-9,12-13H2,1H3,(H,15,16)/b11-10-

InChI Key

CUVLOCDGQCUQSI-KHPPLWFESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lindera umbellata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Unsaturated fatty acids (LMFA01030247 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.84	ALOGPS
logP	5.01	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	4.88	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	69 m³·mol⁻¹	ChemAxon
Polarizability	28.77 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0005051

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB023613

KNApSAcK ID

Not Available

Chemspider ID

4471824

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5312399

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hopkins CY, Chisholm MJ, Prince L: Fatty acids ofLindera umbellata and other Lauraceae seed oils. Lipids. 1966 Mar;1(2):118-22. doi: 10.1007/BF02533002. [PubMed:17805664 ]
LOTUS database [Link]

Showing NP-Card for tuduic acid (NP0288497)

MOL for NP0288497 (tuduic acid)

3D MOL for NP0288497 (tuduic acid)

3D SDF for NP0288497 (tuduic acid)

3D-SDF for NP0288497 (tuduic acid)

PDB for NP0288497 (tuduic acid)

3D PDB for NP0288497 (tuduic acid)

SMILES for NP0288497 (tuduic acid)

INCHI for NP0288497 (tuduic acid)

Structure for NP0288497 (tuduic acid)

3D Structure for NP0288497 (tuduic acid)