NP-MRD: Showing NP-Card for (1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one (NP0288472)

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Record Information

Version

1.0

Created at

2022-09-09 18:11:23 UTC

Updated at

2022-09-09 18:11:23 UTC

NP-MRD ID

NP0288472

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one

Description

Rabdoternin F belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D. (1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one is found in Isodon rubescens and Isodon ternifolius. It was first documented in 2002 (PMID: 12391566). Based on a literature review very few articles have been published on Rabdoternin F (PMID: 16643043).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092220112D          

 28 32  0  0  1  0            999 V2000
    7.9855    0.5473    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0976    0.6705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4364    0.1404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7203   -0.7175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6431    0.5023    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1349    1.3161    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5023    2.0925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3525    2.1330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9517    1.5171    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2374    1.1121    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9029    2.0756    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2098    1.1472    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8469    0.7367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6726    0.9300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5485    0.6124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6633   -0.0011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3082   -0.3537    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5653   -1.2012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4058   -0.5525    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0710   -1.3518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9373    0.2496    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1762   -0.1423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3648   -1.0816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4354   -0.6314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6183    0.4878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7611    1.3190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5253    1.6697    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4787    2.5309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9  2  1  1  0  0  0
  9 10  1  0  0  0  0
  5 10  1  0  0  0  0
 10 11  1  6  0  0  0
 12  6  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 21 19  1  6  0  0  0
 12 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 12 27  1  0  0  0  0
 27 28  1  6  0  0  0
M  END

     RDKit          3D

 58 62  0  0  0  0  0  0  0  0999 V2000
   -4.0091   -2.9636   -0.8242 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2894   -1.8897   -0.5482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2064   -1.7503    0.4211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8651   -2.6645    1.2088 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6537   -0.4040    0.2739 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7313   -0.2515   -0.9021 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3000    0.3856   -2.0882 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5949   -0.3743   -2.4119 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4579   -0.5671   -1.2032 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9376    0.3576   -0.1039 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8011    0.4410    0.9616 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5355    0.4100   -0.3339 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5503    0.5986   -1.4083 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1006    1.6074   -2.2617 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9092    0.9396   -0.9294 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2829    0.4106    0.4141 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4464   -0.7482    0.8692 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9509   -1.9523    0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8777   -1.0658    2.2983 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9927   -0.6085    0.7009 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2226   -0.2520    1.9562 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0127   -1.3607    2.7558 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1339    0.2465    1.5084 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0834    0.1312    2.5049 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9557    1.5857    1.1590 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1031    1.6976    0.2365 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0225    2.4917    0.8586 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1125    3.7781    0.3538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7967   -2.9711   -1.5643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8454   -3.9119   -0.3141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3958   -1.2908   -1.1765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6276    0.1576   -2.9673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4345    1.4620   -2.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1199    0.0892   -3.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2716   -1.3814   -2.7553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5167   -0.3469   -1.4563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7367    1.3352   -0.5220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2602    1.3280    0.9243 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6232   -0.3132   -2.0707 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4178    1.4837   -3.1904 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1191    2.0367   -0.9107 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6344    0.5765   -1.7242 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4079    1.1984    1.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3388    0.0060    0.3193 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3396   -1.5936   -0.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0950   -2.6163   -0.2054 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7804   -2.4584    0.5362 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9266   -0.6981    2.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2570   -0.6088    3.0614 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9284   -2.1618    2.4779 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6050   -1.6491    0.4615 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7109    0.5818    2.4911 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5287   -2.1630    2.4651 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0172    0.9574    3.0607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3199    2.3198   -0.6087 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1523    4.3306    0.4331 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5128    3.7512   -0.6549 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8639    4.3216    0.9966 H   0  0  0  0  0  0  0  0  0  0  0  0
 28 27  1  0
 27 26  1  0
 26 25  1  0
 25 23  1  0
 23 24  1  1
 23 21  1  0
 21 22  1  0
 21 20  1  0
 20 17  1  0
 17 18  1  0
 17 19  1  0
 17 16  1  0
 16 15  1  0
 15 13  1  0
 13 14  1  0
 12 13  1  6
 12  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10  5  1  0
  5  3  1  1
  3  4  2  0
  3  2  1  0
  2  1  2  3
 12 26  1  0
  5  6  1  0
  5 23  1  0
 12 20  1  0
  2  9  1  0
 28 56  1  0
 28 57  1  0
 28 58  1  0
 26 55  1  6
 24 54  1  0
 21 52  1  1
 22 53  1  0
 20 51  1  6
 18 45  1  0
 18 46  1  0
 18 47  1  0
 19 48  1  0
 19 49  1  0
 19 50  1  0
 16 43  1  0
 16 44  1  0
 15 41  1  0
 15 42  1  0
 13 39  1  6
 14 40  1  0
  6 31  1  6
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  6
 10 37  1  6
 11 38  1  0
  1 29  1  0
  1 30  1  0
M  END


  Mrv1652309092220112D          

 28 32  0  0  1  0            999 V2000
    7.9855    0.5473    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0976    0.6705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4364    0.1404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7203   -0.7175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6431    0.5023    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1349    1.3161    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5023    2.0925    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3525    2.1330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9517    1.5171    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2374    1.1121    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9029    2.0756    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2098    1.1472    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8469    0.7367    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6726    0.9300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5485    0.6124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6633   -0.0011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3082   -0.3537    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5653   -1.2012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4058   -0.5525    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0710   -1.3518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9373    0.2496    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1762   -0.1423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3648   -1.0816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4354   -0.6314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6183    0.4878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7611    1.3190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5253    1.6697    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4787    2.5309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9  2  1  1  0  0  0
  9 10  1  0  0  0  0
  5 10  1  0  0  0  0
 10 11  1  6  0  0  0
 12  6  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 21 19  1  6  0  0  0
 12 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 12 27  1  0  0  0  0
 27 28  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0288472

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1O[C@]2(O)[C@@H](O)[C@@H]3C(C)(C)CC[C@H](O)[C@]13[C@@H]1CC[C@@H]3[C@@H](O)[C@]21C(=O)C3=C

> <INCHI_IDENTIFIER>
InChI=1S/C21H30O7/c1-9-10-5-6-11-19-12(22)7-8-18(2,3)13(19)16(25)21(26,28-17(19)27-4)20(11,14(9)23)15(10)24/h10-13,15-17,22,24-26H,1,5-8H2,2-4H3/t10-,11-,12-,13+,15+,16-,17?,19-,20-,21+/m0/s1

> <INCHI_KEY>
UHERRNNNKBWWKU-YBPTWNEWSA-N

> <FORMULA>
C21H30O7

> <MOLECULAR_WEIGHT>
394.464

> <EXACT_MASS>
394.199153306

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
40.54390760271231

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,5S,8R,9S,10S,11R,15S,18R)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1^{5,8}.0^{1,11}.0^{2,8}]octadecan-7-one

> <JCHEM_LOGP>
0.8195107560000006

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.571572957632164

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.45987090516158

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0073593128097276

> <JCHEM_POLAR_SURFACE_AREA>
116.45000000000002

> <JCHEM_REFRACTIVITY>
97.65839999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,5S,8R,9S,10S,11R,15S,18R)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1^{5,8}.0^{1,11}.0^{2,8}]octadecan-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      14.906   1.022   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      13.249   1.252   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.015   0.262   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      12.545  -1.339   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      10.534   0.938   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.585   2.457   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.271   3.906   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.858   3.982   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.977   2.832   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.643   2.076   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      11.019   3.875   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.858   2.141   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.047   1.375   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      10.589   1.736   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      12.224   1.143   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.705  -0.002   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.909  -0.660   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      10.388  -2.242   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       8.224  -1.031   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       7.599  -2.523   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       7.350   0.466   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.929  -0.266   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.281  -2.019   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.546  -1.179   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.888   0.911   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.154   2.462   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.581   3.117   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       6.494   4.724   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    9                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   10   17                                             
CONECT    6    5    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    2   10                                                  
CONECT   10    9    5   11                                                  
CONECT   11   10                                                            
CONECT   12    6   13   21   27                                             
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17                                                       
CONECT   17   16    5   18   19                                             
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   12   22                                                  
CONECT   22   21   23   24   25                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   22   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   12   28                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₀O₇

Average Mass

394.4640 Da

Monoisotopic Mass

394.19915 Da

IUPAC Name

(1R,2S,5S,8R,9S,10S,11R,15S,18R)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1^{5,8}.0^{1,11}.0^{2,8}]octadecan-7-one

Traditional Name

(1R,2S,5S,8R,9S,10S,11R,15S,18R)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1^{5,8}.0^{1,11}.0^{2,8}]octadecan-7-one

CAS Registry Number

Not Available

SMILES

COC1O[C@]2(O)[C@@H](O)[C@@H]3C(C)(C)CC[C@H](O)[C@]13[C@@H]1CC[C@@H]3[C@@H](O)[C@]21C(=O)C3=C

InChI Identifier

InChI=1S/C21H30O7/c1-9-10-5-6-11-19-12(22)7-8-18(2,3)13(19)16(25)21(26,28-17(19)27-4)20(11,14(9)23)15(10)24/h10-13,15-17,22,24-26H,1,5-8H2,2-4H3/t10-,11-,12-,13+,15+,16-,17?,19-,20-,21+/m0/s1

InChI Key

UHERRNNNKBWWKU-YBPTWNEWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon rubescens	LOTUS Database	35616633
Isodon ternifolius	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Kaurane diterpenoids

Alternative Parents

Substituents

Kaurane diterpenoid
Oxane
Cyclic alcohol
Secondary alcohol
Ketone
Hemiacetal
Oxacycle
Organoheterocyclic compound
Polyol
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.82	ChemAxon
pKa (Strongest Acidic)	10.46	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	116.45 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	97.66 m³·mol⁻¹	ChemAxon
Polarizability	40.54 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00034653

Chemspider ID

68025127

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101663494

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Li LM, Li GY, Huang SX, Li SH, Zhou Y, Xiao WL, Lou LG, Ding LS, Sun HD: 7alpha,20-epoxy-ent-kauranoids from Isodon parvifolius. J Nat Prod. 2006 Apr;69(4):645-9. doi: 10.1021/np0600200. [PubMed:16643043 ]
Li SH, Niu XM, Peng LY, Zhang HJ, Yao P, Sun HD: ent-Kaurane diterpenoids from the leaves of Isodon xerophilus. Planta Med. 2002 Oct;68(10):946-8. doi: 10.1055/s-2002-34926. [PubMed:12391566 ]
LOTUS database [Link]

Showing NP-Card for (1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one (NP0288472)

MOL for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

3D MOL for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

3D SDF for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

3D-SDF for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

PDB for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

3D PDB for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

SMILES for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

INCHI for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

Structure for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)

3D Structure for NP0288472 ((1r,2s,5s,8r,9s,10s,11r,15s,18r)-9,10,15,18-tetrahydroxy-16-methoxy-12,12-dimethyl-6-methylidene-17-oxapentacyclo[7.6.2.1⁵,⁸.0¹,¹¹.0²,⁸]octadecan-7-one)