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Record Information
Version2.0
Created at2022-09-09 17:32:30 UTC
Updated at2022-09-09 17:32:30 UTC
NP-MRD IDNP0288016
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2s,3r,4s,5s,6r)-2-[4-(1,3-dihydroxy-2-{4-[(1e)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenoxy}propyl)-2-methoxyphenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
DescriptionCitrusin B belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones. (2s,3r,4s,5s,6r)-2-[4-(1,3-dihydroxy-2-{4-[(1e)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenoxy}propyl)-2-methoxyphenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol is found in Alpinia zerumbet, Citrus limon, Eucommia ulmoides, Hovenia trichocarpa, Picrasma quassioides and Sargentodoxa cuneata. (2s,3r,4s,5s,6r)-2-[4-(1,3-dihydroxy-2-{4-[(1e)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenoxy}propyl)-2-methoxyphenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol was first documented in 2008 (PMID: 19216160). Based on a literature review a significant number of articles have been published on Citrusin B (PMID: 24380304) (PMID: 36069750) (PMID: 21916771) (PMID: 22032139) (PMID: 24079238).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H36O13
Average Mass568.5720 Da
Monoisotopic Mass568.21559 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
COC1=CC(=CC=C1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)C(O)C(CO)OC1=C(OC)C=C(\C=C\CO)C=C1OC
InChI Identifier
InChI=1S/C27H36O13/c1-35-17-11-15(6-7-16(17)39-27-25(34)24(33)23(32)21(13-30)40-27)22(31)20(12-29)38-26-18(36-2)9-14(5-4-8-28)10-19(26)37-3/h4-7,9-11,20-25,27-34H,8,12-13H2,1-3H3/b5-4+/t20?,21-,22?,23-,24+,25-,27-/m1/s1
InChI KeyXMGKCJUCYBLMBY-ONCYFVLKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Alpinia zerumbetLOTUS Database
Citrus limonLOTUS Database
Eucommia ulmoidesLOTUS Database
Hovenia trichocarpaLOTUS Database
Picrasma quassioidesLOTUS Database
Sargentodoxa cuneataLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as lignan glycosides. These are aromatic polycyclic compounds containing a carbohydrate component glycosidically linked to a lignan moiety. They include 1-aryltetralin lactones.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassLignan glycosides
Sub ClassNot Available
Direct ParentLignan glycosides
Alternative Parents
Substituents
  • Lignan glycoside
  • Phenolic glycoside
  • Hexose monosaccharide
  • O-glycosyl compound
  • Glycosyl compound
  • Cinnamyl alcohol
  • M-dimethoxybenzene
  • Dimethoxybenzene
  • Phenoxy compound
  • Phenol ether
  • Anisole
  • Styrene
  • Methoxybenzene
  • Alkyl aryl ether
  • Oxane
  • Monosaccharide
  • Monocyclic benzene moiety
  • Benzenoid
  • Secondary alcohol
  • Acetal
  • Oxacycle
  • Organoheterocyclic compound
  • Ether
  • Polyol
  • Organic oxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Aromatic alcohol
  • Primary alcohol
  • Organooxygen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00040918
Chemspider ID10273115
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11972318
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Fan QL, Liu J, Zhao MM, Han FS, Tan CH, Huang CG, Zhu DY: [Studies on phenylpropanoids from herbs of Eriophyton wallichii]. Zhongguo Zhong Yao Za Zhi. 2008 Nov;33(22):2636-9. [PubMed:19216160 ]
  2. Xu L, Li YR, Li C, Lin LM, Wang ZM, Luo YM: [Chemical constituents from whole plants of Aconitum tanguticum]. Zhongguo Zhong Yao Za Zhi. 2013 Sep;38(17):2818-25. [PubMed:24380304 ]
  3. Anh BTM, Trang DT, Lan HTT, Van Kiem P, Tai BH, Dung NV, Nam NKT, Cuong NT, Nhiem NX, Mai NT: Constituents of Tinospora sinensis and their nitric oxide inhibitory activities. J Asian Nat Prod Res. 2022 Sep 7:1-7. doi: 10.1080/10286020.2022.2113975. [PubMed:36069750 ]
  4. Tan QW, Ouyang MA, Wu ZJ: A new seco-neolignan glycoside from the root bark of Ailanthus altissima. Nat Prod Res. 2012;26(15):1375-80. doi: 10.1080/14786419.2011.587187. Epub 2011 Sep 15. [PubMed:21916771 ]
  5. Lin S, Zhang Z, Shen Y, Li H, Shan L, Liu R, Xu X, Zhang W: [One new lignan glycoside from whole plants of Senecio chrysanthemoides]. Zhongguo Zhong Yao Za Zhi. 2011 Jul;36(13):1755-62. [PubMed:22032139 ]
  6. Yuan XD, Gao HM, Chen LM, Zhang QW, Wang ZM: [A new lignan from stems of Sargentodoxa cuneata]. Zhongguo Zhong Yao Za Zhi. 2013 Jul;38(13):2118-24. [PubMed:24079238 ]
  7. LOTUS database [Link]