Np mrd loader

Record Information
Version2.0
Created at2022-09-09 17:30:42 UTC
Updated at2022-09-09 17:30:42 UTC
NP-MRD IDNP0287994
Secondary Accession NumbersNone
Natural Product Identification
Common Name1-[(4ar,6r,7as)-2-hydroxy-2-oxo-tetrahydro-4h-2λ⁵-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-4-hydroxy-5-methylpyrimidin-2-one
Description3',5'-Cyclic dTMP, also known as CTMP or cyclic TMP, belongs to the class of organic compounds known as pyrimidones. Pyrimidones are compounds that contain a pyrimidine ring, which bears a ketone. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions. 3',5'-Cyclic dTMP is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. 1-[(4ar,6r,7as)-2-hydroxy-2-oxo-tetrahydro-4h-2λ⁵-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-4-hydroxy-5-methylpyrimidin-2-one is found in Pisum sativum. 1-[(4ar,6r,7as)-2-hydroxy-2-oxo-tetrahydro-4h-2λ⁵-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-4-hydroxy-5-methylpyrimidin-2-one was first documented in 1986 (PMID: 3019316). Based on a literature review very few articles have been published on 3',5'-cyclic dTMP.
Structure
Thumb
Synonyms
ValueSource
3',5'-Cyclic thymidine monophosphateChEBI
CTMPChEBI
Cyclic 3',5'-thymidine monophosphateChEBI
Cyclic 3',5'-thymidylic acidChEBI
Cyclic TMPChEBI
Thymidine 3',5'-cyclic monophosphateChEBI
Thymidine cyclic 3',5'-phosphateChEBI
Thymidine cyclophosphateChEBI
Thymidine, cyclic 3',5'-(hydrogen phosphate)ChEBI
3',5'-Cyclic thymidine monophosphoric acidGenerator
Cyclic 3',5'-thymidine monophosphoric acidGenerator
Cyclic 3',5'-thymidylateGenerator
Thymidine 3',5'-cyclic monophosphoric acidGenerator
Thymidine cyclic 3',5'-phosphoric acidGenerator
Thymidine cyclophosphoric acidGenerator
Thymidine, cyclic 3',5'-(hydrogen phosphoric acid)Generator
Chemical FormulaC10H13N2O7P
Average Mass304.1950 Da
Monoisotopic Mass304.04604 Da
IUPAC Name4-hydroxy-1-[(6R)-2-hydroxy-2-oxo-hexahydro-2lambda5-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-5-methyl-1,2-dihydropyrimidin-2-one
Traditional Name4-hydroxy-1-[(6R)-2-hydroxy-2-oxo-tetrahydro-4H-2lambda5-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-5-methylpyrimidin-2-one
CAS Registry NumberNot Available
SMILES
CC1=CN([C@H]2C[C@@H]3OP(O)(=O)OC[C@H]3O2)C(=O)N=C1O
InChI Identifier
InChI=1S/C10H13N2O7P/c1-5-3-12(10(14)11-9(5)13)8-2-6-7(18-8)4-17-20(15,16)19-6/h3,6-8H,2,4H2,1H3,(H,15,16)(H,11,13,14)/t6-,7+,8+/m0/s1
InChI KeyQSJFDOVQWZVUQG-XLPZGREQSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pisum sativumLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrimidones. Pyrimidones are compounds that contain a pyrimidine ring, which bears a ketone. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazines
Sub ClassPyrimidines and pyrimidine derivatives
Direct ParentPyrimidones
Alternative Parents
Substituents
  • Pyrimidone
  • Hydropyrimidine
  • Organic phosphoric acid derivative
  • Tetrahydrofuran
  • Heteroaromatic compound
  • Vinylogous amide
  • Lactam
  • Urea
  • Oxacycle
  • Azacycle
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.021ChemAxon
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-4ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area117.89 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity62.83 m³·mol⁻¹ChemAxon
Polarizability26.24 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID13628274
KEGG Compound IDNot Available
BioCyc IDCPD-3733
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12359154
PDB IDNot Available
ChEBI ID75183
Good Scents IDNot Available
References
General References
  1. Newton RP, Kingston EE, Hakeem NA, Salih SG, Beynon JH, Moyse CD: Extraction, purification, identification and metabolism of 3',5'-cyclic UMP, 3',5'-cyclic IMP and 3',5'-cyclic dTMP from rat tissues. Biochem J. 1986 Jun 1;236(2):431-9. doi: 10.1042/bj2360431. [PubMed:3019316 ]
  2. LOTUS database [Link]