NP-MRD: Showing NP-Card for trichodiene (NP0287613)

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Record Information

Version

2.0

Created at

2022-09-09 16:51:44 UTC

Updated at

2022-09-09 16:51:44 UTC

NP-MRD ID

NP0287613

Secondary Accession Numbers

None

Natural Product Identification

Common Name

trichodiene

Description

trichodiene is found in Fusarium culmorum, Fusarium sporotrichioides and Trichothecium roseum.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
   -1.7311    0.0229    2.4144 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9862    0.1063    1.1514 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4204    0.1740    0.6344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3292   -1.0402   -0.3062 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9450   -0.8519   -0.9504 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2135    0.1501   -0.0695 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4706    1.5100   -0.7571 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2410   -0.0271   -0.0559 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6787   -0.1285   -1.5403 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8004   -1.2553    0.5865 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2199   -1.3252    0.0442 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9087   -0.1878   -0.1285 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2940   -0.3126   -0.6620 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4039    1.1587    0.1666 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9363    1.1675    0.5563 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7369   -0.0360    2.7993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5254    0.0089    3.1499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6251    1.1048    0.1113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1576    0.0135    1.4159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1256   -1.0326   -1.0502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3458   -1.9365    0.3432 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4666   -1.8236   -1.0058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1191   -0.4396   -1.9767 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6066    1.7958   -1.3963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3440    1.4637   -1.4260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6447    2.2924   -0.0146 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1882   -0.1716   -2.2203 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2573   -1.0506   -1.7347 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3541    0.7149   -1.8010 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3123   -2.1859    0.2651 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9466   -1.2173    1.6672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6677   -2.2567   -0.1969 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7664    0.6526   -0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3185   -0.8802   -1.6168 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8991   -0.8339    0.1185 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0184    1.5722    1.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5345    1.8883   -0.6567 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9239    1.0700    1.6540 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4998    2.1266    0.2844 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 10  8  1  0
  8  9  1  6
  8 15  1  0
 15 14  1  0
  8  6  1  0
  6  7  1  6
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
 14 12  1  0
  2  6  1  0
 13 33  1  0
 13 34  1  0
 13 35  1  0
 11 32  1  0
 10 30  1  0
 10 31  1  0
  9 27  1  0
  9 28  1  0
  9 29  1  0
 15 38  1  0
 15 39  1  0
 14 36  1  0
 14 37  1  0
  7 24  1  0
  7 25  1  0
  7 26  1  0
  5 22  1  0
  5 23  1  0
  4 20  1  0
  4 21  1  0
  3 18  1  0
  3 19  1  0
  1 16  1  0
  1 17  1  0
M  END

 
  Mrv1533006081518272D          
 
 15 16  0  0  1  0            999 V2000
   14.0195   -9.1611    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.7037   -9.1611    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.5022   -9.8285    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5022   -8.4937    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5972   -8.4447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2964   -8.4447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2927   -9.8814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1445   -9.9036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2789   -9.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2494  -10.6502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2827   -8.7577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4632   -8.4523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4707   -9.8851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0521   -9.1686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2713   -9.1762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  1  4  1  0  0  0  0
  1  5  1  6  0  0  0
  2  6  1  0  0  0  0
  2  7  1  0  0  0  0
  2  8  1  1  0  0  0
  3  9  1  0  0  0  0
  3 10  2  0  0  0  0
  4 11  1  0  0  0  0
  6 12  1  0  0  0  0
  7 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 11  1  0  0  0  0
 13 14  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0287613

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC[C@](C)(CC1)[C@@]1(C)CCCC1=C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24/c1-12-7-10-14(3,11-8-12)15(4)9-5-6-13(15)2/h7H,2,5-6,8-11H2,1,3-4H3/t14-,15+/m1/s1

> <INCHI_KEY>
YFLSTROSSKYYNK-CABCVRRESA-N

> <FORMULA>
C15H24

> <MOLECULAR_WEIGHT>
204.357

> <EXACT_MASS>
204.187800773

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
25.2720847458581

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4S)-1,4-dimethyl-4-[(1S)-1-methyl-2-methylidenecyclopentyl]cyclohex-1-ene

> <ALOGPS_LOGP>
6.03

> <JCHEM_LOGP>
4.532337415333334

> <ALOGPS_LOGS>
-5.10

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
67.37889999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.64e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
trichodiene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 08-JUN-15   NONE
TITLE     NULL                                                        
COMPND    MOLECULE:                                                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-JUN-15         0                                  
HETATM    1  C   UNK     0      26.170 -17.101   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      23.714 -17.101   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      27.071 -18.347   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      27.071 -15.855   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      25.381 -15.763   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      22.953 -15.763   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      22.946 -18.445   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      24.536 -18.487   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      28.521 -17.861   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      26.599 -19.880   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      28.528 -16.348   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      21.398 -15.778   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      21.412 -18.452   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      20.631 -17.115   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      19.173 -17.129   0.000  0.00  0.00           C+0
CONECT    1    2    3    4    5                                             
CONECT    2    1    6    7    8                                             
CONECT    3    1    9   10                                                  
CONECT    4    1   11                                                       
CONECT    5    1                                                            
CONECT    6    2   12                                                       
CONECT    7    2   13                                                       
CONECT    8    2                                                            
CONECT    9    3   11                                                       
CONECT   10    3                                                            
CONECT   11    4    9                                                       
CONECT   12    6   14                                                       
CONECT   13    7   14                                                       
CONECT   14   12   15   13                                                  
CONECT   15   14                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

View in JSmol

Synonyms

Value	Source
1,4-Dimethyl-4-(1-methyl-2-methylenecyclopentyl)cyclohexene	ChEBI

Chemical Formula

C₁₅H₂₄

Average Mass

204.3570 Da

Monoisotopic Mass

204.18780 Da

IUPAC Name

(4S)-1,4-dimethyl-4-[(1S)-1-methyl-2-methylidenecyclopentyl]cyclohex-1-ene

Traditional Name

trichodiene

CAS Registry Number

Not Available

SMILES

CC1=CC[C@](C)(CC1)[C@@]1(C)CCCC1=C

InChI Identifier

InChI=1S/C15H24/c1-12-7-10-14(3,11-8-12)15(4)9-5-6-13(15)2/h7H,2,5-6,8-11H2,1,3-4H3/t14-,15+/m1/s1

InChI Key

YFLSTROSSKYYNK-CABCVRRESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Fusarium culmorum	LOTUS Database	35616633
Fusarium sporotrichioides	LOTUS Database	35616633
Trichothecium roseum	LOTUS Database	35616633

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as cycloalkenes. These are unsaturated monocyclic hydrocarbons having one endocyclic double bond.

Kingdom

Organic compounds

Super Class

Hydrocarbons

Class

Unsaturated hydrocarbons

Sub Class

Olefins

Direct Parent

Cycloalkenes

Alternative Parents

Unsaturated aliphatic hydrocarbons

Substituents

Cycloalkene
Unsaturated aliphatic hydrocarbon
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

sesquiterpene (CHEBI:15861 )
Trichothecane sesquiterpenoids (C01860 )
Bisabolanes (C01860 )
Trichothecane sesquiterpenoids (LMPR0103180001 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.03	ALOGPS
logP	4.53	ChemAxon
logS	-5.1	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	67.38 m³·mol⁻¹	ChemAxon
Polarizability	25.27 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

102815

KEGG Compound ID

C01860

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

114857

PDB ID

Not Available

ChEBI ID

15861

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for trichodiene (NP0287613)

MOL for NP0287613 (trichodiene)

3D MOL for NP0287613 (trichodiene)

3D SDF for NP0287613 (trichodiene)

3D-SDF for NP0287613 (trichodiene)

PDB for NP0287613 (trichodiene)

3D PDB for NP0287613 (trichodiene)

SMILES for NP0287613 (trichodiene)

INCHI for NP0287613 (trichodiene)

Structure for NP0287613 (trichodiene)

3D Structure for NP0287613 (trichodiene)