NP-MRD: Showing NP-Card for 18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one (NP0287305)

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Record Information

Version

2.0

Created at

2022-09-09 16:18:26 UTC

Updated at

2022-09-09 16:18:27 UTC

NP-MRD ID

NP0287305

Secondary Accession Numbers

None

Natural Product Identification

Common Name

18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one

Description

Pseudobrucine belongs to the class of organic compounds known as strychnos alkaloids. These are alkaloids having a core structure based on the strychnan, stemmadenine (seco-curan), or the akuammicine (curan) skeleton. 18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one is found in Strychnos nux-vomica. Pseudobrucine is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241521142D          

 30 36  0  0  0  0            999 V2000
   -0.5861   -1.4325    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.0785    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8383   -1.5469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7722   -2.3692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4514   -2.8376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1966   -2.4837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2626   -1.6613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5835   -1.1929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1064   -1.3552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5627   -0.6724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0220    0.0334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8986   -0.1039    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8378   -0.8821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7660   -1.0756    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7061   -1.5939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3042   -2.2493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4728   -2.1228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9802   -2.7892    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3565   -3.5430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9057   -4.2339    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2004   -3.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7270   -2.9050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5824   -2.8629    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1547   -2.2055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9979   -1.3846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3209   -0.9056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8121   -0.0590    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9890   -1.6931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0270   -2.7232    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0390   -3.5455    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
  6 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 16 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 15 26  1  0  0  0  0
 26 27  1  0  0  0  0
 12 27  1  0  0  0  0
 13 28  1  0  0  0  0
  4 29  1  0  0  0  0
 29 30  1  0  0  0  0
M  END

     RDKit          3D

 56 62  0  0  0  0  0  0  0  0999 V2000
    5.3922   -2.0014   -0.7354 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0801   -0.7093   -0.2872 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7445   -0.3331   -0.1049 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7195   -1.1797   -0.3473 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3827   -0.7934   -0.1618 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0705    0.4707    0.2774 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1146    1.3137    0.5176 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4673    0.9597    0.3419 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3887    1.8255    0.5946 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2830    2.7211    0.8586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3944    0.5704    0.3863 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6856    0.7470    1.8909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2563    2.1208    2.0349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9054    2.3781    0.7658 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2397    1.8130    0.7210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2751    0.4764    0.1287 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7804   -0.5042    0.8543 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9599   -1.9537    0.5574 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7658   -2.5299    0.1259 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4203   -2.2026   -1.1752 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3366   -3.1787   -1.5913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0596   -2.8701   -0.9104 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8184   -3.7682   -0.7606 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2497   -1.5775   -0.3974 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9032   -0.7488    0.0058 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7881   -0.8295   -1.2159 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7311    0.3129   -1.2634 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8342    1.5484   -1.4570 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0148    1.7555   -0.2118 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0781    2.7656   -0.5360 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5065   -2.1166   -0.5976 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1279   -2.1655   -1.7828 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9433   -2.7460   -0.0446 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9592   -2.1962   -0.6993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8965    2.3047    0.8606 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5255    2.9239    1.9432 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2848    2.6040    0.3091 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9593    3.7510    0.4868 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2581    0.7100    2.4869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3338   -0.0305    2.2903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5048    2.8826    2.3079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0649    2.1828    2.8180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5926    1.7346    1.7711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9189    2.5420    0.2208 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1189   -0.1860    1.8297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7711   -2.1294   -0.1533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2171   -2.4582    1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2891   -2.2630   -1.8697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2135   -3.0382   -2.7017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6539   -4.2342   -1.4251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3911   -1.2982    0.8353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1211   -0.7797   -2.1308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5060    0.2421   -2.0224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1495    1.3080   -2.2972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4226    2.4454   -1.6594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4744    3.4119   -1.1910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  8  2  0
  8  9  1  0
  9 10  1  0
  8  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  2  0
  5 24  1  0
 24 25  1  0
 25 26  1  0
 26 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 20 19  1  0
 19 18  1  0
 18 17  1  0
 17 16  2  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 11 12  1  1
 11 29  1  0
 29 30  1  6
 29 28  1  0
 28 27  1  0
  4  3  1  0
 22 24  1  0
 27 16  1  0
 11  6  1  0
 11 25  1  0
 27 26  1  0
 29 14  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
 10 36  1  0
 10 37  1  0
 10 38  1  0
  7 35  1  0
  4 34  1  0
 25 51  1  1
 26 52  1  6
 20 48  1  6
 21 49  1  0
 21 50  1  0
 18 46  1  0
 18 47  1  0
 17 45  1  0
 15 43  1  0
 15 44  1  0
 13 41  1  0
 13 42  1  0
 12 39  1  0
 12 40  1  0
 30 56  1  0
 28 54  1  0
 28 55  1  0
 27 53  1  6
M  END


  Mrv1533004241521142D          

 30 36  0  0  0  0            999 V2000
   -0.5861   -1.4325    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.0785    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8383   -1.5469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7722   -2.3692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4514   -2.8376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1966   -2.4837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2626   -1.6613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5835   -1.1929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1064   -1.3552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5627   -0.6724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0220    0.0334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8986   -0.1039    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8378   -0.8821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7660   -1.0756    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7061   -1.5939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3042   -2.2493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4728   -2.1228    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9802   -2.7892    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3565   -3.5430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9057   -4.2339    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2004   -3.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7270   -2.9050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5824   -2.8629    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1547   -2.2055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9979   -1.3846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3209   -0.9056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8121   -0.0590    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9890   -1.6931    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0270   -2.7232    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0390   -3.5455    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
  6 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 16 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 15 26  1  0  0  0  0
 26 27  1  0  0  0  0
 12 27  1  0  0  0  0
 13 28  1  0  0  0  0
  4 29  1  0  0  0  0
 29 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0287305

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(OC)C=C2C(=C1)N1C3C4C(CC1=O)OCC=C1CN5CCC23C5(O)CC41

> <INCHI_IDENTIFIER>
InChI=1S/C23H26N2O5/c1-28-16-7-14-15(8-17(16)29-2)25-19(26)9-18-20-13-10-23(27)22(14,21(20)25)4-5-24(23)11-12(13)3-6-30-18/h3,7-8,13,18,20-21,27H,4-6,9-11H2,1-2H3

> <INCHI_KEY>
JNNROFOMHXIAMQ-UHFFFAOYSA-N

> <FORMULA>
C23H26N2O5

> <MOLECULAR_WEIGHT>
410.47

> <EXACT_MASS>
410.184171945

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
42.83359370251529

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2,4,6,14-tetraen-9-one

> <ALOGPS_LOGP>
1.31

> <JCHEM_LOGP>
0.19279329666666561

> <ALOGPS_LOGS>
-2.18

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
17.239358152693505

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.649448770437498

> <JCHEM_PKA_STRONGEST_BASIC>
7.5364394247505055

> <JCHEM_POLAR_SURFACE_AREA>
71.47000000000001

> <JCHEM_REFRACTIVITY>
109.01180000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.69e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2,4,6,14-tetraen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      -1.094  -2.674   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.297  -2.013   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.565  -2.888   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.441  -4.423   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.709  -5.297   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.100  -4.636   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.224  -3.101   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.956  -2.227   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.799  -2.530   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.784  -1.255   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.641   0.062   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       7.277  -0.194   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       7.164  -1.647   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.897  -2.008   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.785  -2.975   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.035  -4.199   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.483  -3.962   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0       5.563  -5.207   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       6.265  -6.614   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.424  -7.903   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       7.841  -6.690   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.824  -5.423   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      10.420  -5.344   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      11.489  -4.117   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.196  -2.585   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.932  -1.691   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.983  -0.110   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       7.446  -3.161   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       0.050  -5.083   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -0.073  -6.618   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5   29                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   18                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    3                                                       
CONECT    9    7   10   13   17                                             
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   27                                                  
CONECT   13   12    9   14   28                                             
CONECT   14   13   15                                                       
CONECT   15   14   16   26                                                  
CONECT   16   15   17   22                                                  
CONECT   17   16    9   18                                                  
CONECT   18   17    6   19                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   16   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   15   27                                                  
CONECT   27   26   12                                                       
CONECT   28   13                                                            
CONECT   29    4   30                                                       
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₂₆N₂O₅

Average Mass

410.4700 Da

Monoisotopic Mass

410.18417 Da

IUPAC Name

18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2,4,6,14-tetraen-9-one

Traditional Name

18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2,4,6,14-tetraen-9-one

CAS Registry Number

Not Available

SMILES

COC1=C(OC)C=C2C(=C1)N1C3C4C(CC1=O)OCC=C1CN5CCC23C5(O)CC41

InChI Identifier

InChI=1S/C23H26N2O5/c1-28-16-7-14-15(8-17(16)29-2)25-19(26)9-18-20-13-10-23(27)22(14,21(20)25)4-5-24(23)11-12(13)3-6-30-18/h3,7-8,13,18,20-21,27H,4-6,9-11H2,1-2H3

InChI Key

JNNROFOMHXIAMQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Strychnos nux-vomica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as strychnos alkaloids. These are alkaloids having a core structure based on the strychnan, stemmadenine (seco-curan), or the akuammicine (curan) skeleton.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Strychnos alkaloids

Sub Class

Not Available

Direct Parent

Strychnos alkaloids

Alternative Parents

Substituents

Strychnan skeleton
Akuammicine-skeleton
Stemmadenine-skeleton
Carbazole
Quinolidine
Indole or derivatives
Indolizidine
Anisole
Alkyl aryl ether
Delta-lactam
Piperidinone
Benzenoid
N-alkylpyrrolidine
Piperidine
Tertiary carboxylic acid amide
Cyclic alcohol
Pyrrolidine
Carboxamide group
Hemiaminal
Lactam
Oxacycle
Azacycle
Ether
Dialkyl ether
Alkanolamine
Carboxylic acid derivative
Organoheterocyclic compound
Organic oxide
Organopnictogen compound
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.31	ALOGPS
logP	0.19	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	12.65	ChemAxon
pKa (Strongest Basic)	7.54	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	71.47 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	109.01 m³·mol⁻¹	ChemAxon
Polarizability	42.83 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

264628

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one (NP0287305)

MOL for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

3D MOL for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

3D SDF for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

3D-SDF for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

PDB for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

3D PDB for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

SMILES for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

INCHI for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

Structure for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)

3D Structure for NP0287305 (18-hydroxy-4,5-dimethoxy-12-oxa-8,17-diazaheptacyclo[15.5.2.0¹,¹⁸.0²,⁷.0⁸,²².0¹¹,²¹.0¹⁵,²⁰]tetracosa-2(7),3,5,14-tetraen-9-one)