NP-MRD: Showing NP-Card for (2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid (NP0286161)

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Record Information

Version

2.0

Created at

2022-09-09 14:37:07 UTC

Updated at

2022-09-09 14:37:07 UTC

NP-MRD ID

NP0286161

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid

Description

(2S)-2-amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. Based on a literature review very few articles have been published on (2S)-2-amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 31  0  0  0  0  0  0  0  0999 V2000
    4.8530    0.4110    0.4525 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8833   -0.6587    0.3128 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5856   -0.1958   -0.2775 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8750    0.8561    0.5039 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3394    1.2583   -0.3959 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9958   -0.3996   -0.3949 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0921   -0.3162    1.0598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9938    0.8524    0.9602 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8405    0.7901   -0.2844 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7066    1.9880   -0.3251 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6790   -0.4136   -0.3156 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8976   -0.2637   -0.1021 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0154   -2.1648   -0.6650 Se  0  0  0  0  0  2  0  0  0  0  0  0
    4.3878   -1.7544   -0.5317 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6736   -2.7475   -0.7485 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6453   -1.6782   -1.0781 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6072    1.0856    1.1799 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8244    0.0714    0.4987 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6623   -1.0166    1.3603 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7230    0.1261   -1.3195 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9140   -1.0980   -0.2921 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5429    0.4604    1.5000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4267    1.7968    0.6329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3877   -0.1392    1.9344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5521   -1.2924    1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6446    0.8647    1.8637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3394    1.7727    0.9479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1962    0.8468   -1.1780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9944    2.1948    0.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0575    2.7663   -0.6461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5861   -3.1586    0.3856 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0356   -0.8443   -1.5158 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 13  1  0
 11 12  2  0
  2 14  1  0
 14 16  1  0
 14 15  2  0
  1 17  1  0
  1 18  1  0
  2 19  1  1
  3 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
  9 28  1  6
 10 29  1  0
 10 30  1  0
 13 31  1  0
 16 32  1  0
M  END


  Mrv1652309092216372D          

 16 15  0  0  1  0            999 V2000
    9.9513    4.0954    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9500    2.0329    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 Se  0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  2 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0286161

> <DATABASE_NAME>
NP-MRD

> <SMILES>
N[C@@H](CCSSCC[C@H](N)C([SeH])=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H16N2O3S2Se/c9-5(7(11)12)1-3-14-15-4-2-6(10)8(13)16/h5-6H,1-4,9-10H2,(H,11,12)(H,13,16)/t5-,6-/m0/s1

> <INCHI_KEY>
QLKCVBDPVHZHQF-WDSKDSINSA-N

> <FORMULA>
C8H16N2O3S2Se

> <MOLECULAR_WEIGHT>
331.32

> <EXACT_MASS>
331.976757

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
28.237774402282533

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid

> <JCHEM_LOGP>
-6.904444621077727

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
2.1022889553786626

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.0590133826016537

> <JCHEM_PKA_STRONGEST_BASIC>
9.588119367746133

> <JCHEM_POLAR_SURFACE_AREA>
106.41000000000001

> <JCHEM_REFRACTIVITY>
76.0189

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  N   UNK     0      18.576   7.645   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      17.242   5.335   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM    5  S   UNK     0      14.575   5.335   0.000  0.00  0.00           S+0
HETATM    6  S   UNK     0      13.241   6.105   0.000  0.00  0.00           S+0
HETATM    7  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       9.240   3.795   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       6.573   5.335   0.000  0.00  0.00           O+0
HETATM   13 Se   UNK     0       7.906   7.645   0.000  0.00  0.00          Se+0
HETATM   14  C   UNK     0      19.909   5.335   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      21.243   6.105   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      19.909   3.795   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   14                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    2   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

View in JSmol

Synonyms

Value	Source
(2S)-2-Amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoate	Generator
(2S)-2-Amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulphanyl}butanoate	Generator
(2S)-2-Amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulphanyl}butanoic acid	Generator

Chemical Formula

C₈H₁₆N₂O₃S₂Se

Average Mass

331.3200 Da

Monoisotopic Mass

331.97676 Da

IUPAC Name

(2S)-2-amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid

Traditional Name

(2S)-2-amino-4-{[(3S)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid

CAS Registry Number

Not Available

SMILES

N[C@@H](CCSSCC[C@H](N)C([SeH])=O)C(O)=O

InChI Identifier

InChI=1S/C8H16N2O3S2Se/c9-5(7(11)12)1-3-14-15-4-2-6(10)8(13)16/h5-6H,1-4,9-10H2,(H,11,12)(H,13,16)/t5-,6-/m0/s1

InChI Key

QLKCVBDPVHZHQF-WDSKDSINSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Thia fatty acid
Fatty acyl
Fatty acid
Amino acid
Dialkyldisulfide
Carboselenoic acid
Organic disulfide
Sulfenyl compound
Monocarboxylic acid or derivatives
Carboxylic acid
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Selenol
Primary amine
Organosulfur compound
Organoselenium compound
Organooxygen compound
Organonitrogen compound
Primary aliphatic amine
Carbonyl group
Amine
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-6.9	ChemAxon
pKa (Strongest Acidic)	-1.1	ChemAxon
pKa (Strongest Basic)	9.59	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	106.41 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	76.02 m³·mol⁻¹	ChemAxon
Polarizability	28.24 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29317365

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163189336

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid (NP0286161)

MOL for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

3D MOL for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

3D SDF for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

3D-SDF for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

PDB for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

3D PDB for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

SMILES for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

INCHI for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

Structure for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)

3D Structure for NP0286161 ((2s)-2-amino-4-{[(3s)-3-amino-3-(selanylcarbonyl)propyl]disulfanyl}butanoic acid)