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Record Information
Version2.0
Created at2022-09-09 14:25:49 UTC
Updated at2022-09-09 14:25:50 UTC
NP-MRD IDNP0286022
Secondary Accession NumbersNone
Natural Product Identification
Common Name2,3,4,5-tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-2,4',12',14'-tetrahydroxy-4'-methyl-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]tetradecane]-1'(14'),2',10',12'-tetraene-6'-carboxylate
Description2,3,4,5-Tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-2,4',12',14'-tetrahydroxy-4'-methyl-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]Tetradecane]-1'(10'),2',11',13'-tetraene-6'-carboxylate belongs to the class of organic compounds known as pyrimidodiazepines. Pyrimidodiazepines are compounds containing a pyrimidoazepine moiety, which consists of a pyrimidine fused to a piperazine ring by a bond. Pyrimidine is 6-membered ring consisting of five carbon atoms and two nitrogen atoms at ring positions 1 and 3. Diazepine is a 7-membered ring consisting of five carbon atoms and two nitrogen centers. 2,3,4,5-tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-2,4',12',14'-tetrahydroxy-4'-methyl-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]tetradecane]-1'(14'),2',10',12'-tetraene-6'-carboxylate is found in Babylonia japonica. 2,3,4,5-Tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-2,4',12',14'-tetrahydroxy-4'-methyl-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]Tetradecane]-1'(10'),2',11',13'-tetraene-6'-carboxylate is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
2,3,4,5-Tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-2,4',12',14'-tetrahydroxy-4'-methyl-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0,]tetradecane]-1'(10'),2',11',13'-tetraene-6'-carboxylic acidGenerator
2,3,4,5-Tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-2,4',12',14'-tetrahydroxy-4'-methyl-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]tetradecane]-1'(10'),2',11',13'-tetraene-6'-carboxylic acidGenerator
Chemical FormulaC30H34BrN5O15
Average Mass784.5260 Da
Monoisotopic Mass783.12348 Da
IUPAC Name2,3,4,5-tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-4'-hydroxy-4'-methyl-2,12',14'-trioxo-1,2-dihydro-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]tetradecane]-1'(10'),2'-diene-6'-carboxylate
Traditional Name2,3,4,5-tetrahydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxy]cyclohexyl 6-bromo-4'-hydroxy-4'-methyl-2,12',14'-trioxo-1H-2',9',11',13'-tetraazaspiro[indole-3,5'-tricyclo[8.4.0.0³,⁷]tetradecane]-1'(10'),2'-diene-6'-carboxylate
CAS Registry NumberNot Available
SMILES
CC1(O)C2=NC3=C(NC(=O)NC3=O)NCC2C(C(=O)OC2C(O)C(O)C(O)C(O)C2OC2OCC(O)C(O)C2O)C11C(=O)NC2=CC(Br)=CC=C12
InChI Identifier
InChI=1S/C30H34BrN5O15/c1-29(48)22-8(5-32-23-13(34-22)24(44)36-28(47)35-23)12(30(29)9-3-2-7(31)4-10(9)33-27(30)46)25(45)50-20-17(41)15(39)16(40)18(42)21(20)51-26-19(43)14(38)11(37)6-49-26/h2-4,8,11-12,14-21,26,37-43,48H,5-6H2,1H3,(H,33,46)(H3,32,35,36,44,47)
InChI KeyBQGIDCZWFREXJV-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Babylonia japonicaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrimidodiazepines. Pyrimidodiazepines are compounds containing a pyrimidoazepine moiety, which consists of a pyrimidine fused to a piperazine ring by a bond. Pyrimidine is 6-membered ring consisting of five carbon atoms and two nitrogen atoms at ring positions 1 and 3. Diazepine is a 7-membered ring consisting of five carbon atoms and two nitrogen centers.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyrimidodiazepines
Sub ClassNot Available
Direct ParentPyrimidodiazepines
Alternative Parents
Substituents
  • Pyrimidodiazepine
  • O-glycosyl compound
  • Glycosyl compound
  • Dihydroindole
  • Indole or derivatives
  • Cyclohexanol
  • Pyrimidone
  • Para-diazepine
  • Secondary aliphatic/aromatic amine
  • Aryl bromide
  • Benzenoid
  • Monosaccharide
  • Cyclitol or derivatives
  • Oxane
  • Pyrimidine
  • Aryl halide
  • Heteroaromatic compound
  • Vinylogous amide
  • Tertiary alcohol
  • Cyclic alcohol
  • Amino acid or derivatives
  • Carboxamide group
  • Carboxylic acid ester
  • Ketimine
  • Lactam
  • Urea
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Polyol
  • Monocarboxylic acid or derivatives
  • Secondary amine
  • Acetal
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Carboxylic acid derivative
  • Azacycle
  • Oxacycle
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Alcohol
  • Imine
  • Amine
  • Carbonyl group
  • Organic oxide
  • Organohalogen compound
  • Organobromide
  • Organonitrogen compound
  • Organooxygen compound
  • Organic nitrogen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.5ALOGPS
logP-4.3ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)8.27ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count16ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area318.29 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity177.78 m³·mol⁻¹ChemAxon
Polarizability70.54 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5248475
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]