NP-MRD: Showing NP-Card for (1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid (NP0285439)

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Record Information

Version

2.0

Created at

2022-09-09 13:36:41 UTC

Updated at

2022-09-09 13:36:41 UTC

NP-MRD ID

NP0285439

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid

Description

Xylopic acid, also known as xylopate, belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D. (1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid is found in Xylopia frutescens. (1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid was first documented in 2015 (PMID: 26692735). Based on a literature review a significant number of articles have been published on Xylopic acid (PMID: 33487063) (PMID: 35746979) (PMID: 35272600) (PMID: 35260973) (PMID: 35098133) (PMID: 34824739).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092215362D          

 26 29  0  0  1  0            999 V2000
    0.1083   -0.0934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9271    0.0076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3468    0.7645    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9499    1.3881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7817    1.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9702    0.3405    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7888    0.1804    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5217    0.9610    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3318    0.8015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1412    0.6418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4076   -0.1390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8646   -0.7601    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5705   -1.1870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5667   -1.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7515   -1.6562    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0841   -2.1721    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0552   -0.6004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5166   -1.2331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6973   -1.0762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3575   -0.2939    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8864    0.2564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5239   -0.6310    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3460   -1.4366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5593   -1.6852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3814   -2.4908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0493   -1.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  1  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 12 17  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  6 20  1  0  0  0  0
 20 21  1  1  0  0  0
  3 21  1  1  0  0  0
 20 22  1  0  0  0  0
  2 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
M  END

     RDKit          3D

 58 61  0  0  0  0  0  0  0  0999 V2000
    4.5081   -0.7429   -0.6534 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4107   -0.8744    0.0628 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8814   -2.1231    0.6646 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1795   -2.8558   -0.4759 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6976   -2.5830   -0.3943 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4071   -1.0919   -0.1673 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0906   -0.9256   -0.1395 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6408   -2.2118    0.5095 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5498   -0.9534   -1.5651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7925   -0.2606   -1.8979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6393    0.1846   -0.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7649    0.9566    0.1872 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3316    2.2111   -0.5863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6144    1.4424    1.3085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8056    1.0557    1.3826 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1345    2.3229    2.2957 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5934    0.1970    0.6890 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4978    1.2367    0.9801 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5128    0.4773    1.8050 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2010   -0.5007    0.9128 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8694   -1.6315    1.7087 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4710    0.2045    0.4182 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2362    1.1079   -0.6185 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5826    2.4557   -0.4034 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3812    3.4971   -1.4234 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0901    2.8047    0.7088 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1776   -1.5603   -0.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7938    0.2397   -1.0452 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6676   -2.7411    1.1330 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6101   -2.6311   -1.4530 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3407   -3.9350   -0.2825 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3060   -3.2293    0.3865 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2651   -2.8527   -1.3877 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7732   -0.6094   -1.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1621   -2.3870    1.5010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6367   -3.0557   -0.1736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7281   -2.0544    0.7814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7267   -0.5384   -2.2224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6166   -2.0274   -1.8942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4506   -0.9030   -2.5576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6101    0.6501   -2.5449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2659   -0.5784   -0.2969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3723    0.9429   -1.1727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5946    1.9573   -1.3551 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2661    2.5357   -1.1332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0319    3.0312    0.0902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2222    3.3119    2.1816 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8687   -0.1538    1.7324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9704    2.0553    1.5198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1390    1.5918    0.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0518   -0.0914    2.5712 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2407    1.1286    2.2861 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1770   -2.3997    2.0291 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4812   -1.2063    2.5274 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9184    0.7032    1.3252 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3782    3.9987   -1.3214 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1375    4.3004   -1.3045 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4729    3.1080   -2.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
 25 24  1  0
 24 26  2  0
 24 23  1  0
 23 22  1  0
 22  2  1  0
  2  1  2  3
  2  3  1  0
  3 21  1  0
 21 20  1  0
 20 19  1  1
 19 18  1  0
 18 17  1  0
 17  7  1  0
  7  8  1  1
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  1
 14 16  1  0
 14 15  2  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
 20 22  1  0
  6 20  1  0
  4  3  1  0
 12 17  1  0
 25 56  1  0
 25 57  1  0
 25 58  1  0
 22 55  1  1
  1 27  1  0
  1 28  1  0
  3 29  1  1
 21 53  1  0
 21 54  1  0
 19 51  1  0
 19 52  1  0
 18 49  1  0
 18 50  1  0
 17 48  1  1
  8 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
  9 39  1  0
 10 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 13 44  1  0
 13 45  1  0
 13 46  1  0
 16 47  1  0
  6 34  1  6
  5 32  1  0
  5 33  1  0
  4 30  1  0
  4 31  1  0
M  END


  Mrv1652309092215362D          

 26 29  0  0  1  0            999 V2000
    0.1083   -0.0934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9271    0.0076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3468    0.7645    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9499    1.3881    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7817    1.1890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9702    0.3405    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7888    0.1804    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5217    0.9610    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3318    0.8015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1412    0.6418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4076   -0.1390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8646   -0.7601    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5705   -1.1870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5667   -1.5294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7515   -1.6562    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0841   -2.1721    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0552   -0.6004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5166   -1.2331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6973   -1.0762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3575   -0.2939    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8864    0.2564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5239   -0.6310    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3460   -1.4366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5593   -1.6852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3814   -2.4908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0493   -1.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  1  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 12 17  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  6 20  1  0  0  0  0
 20 21  1  1  0  0  0
  3 21  1  1  0  0  0
 20 22  1  0  0  0  0
  2 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0285439

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@@H]1C(=C)[C@H]2C[C@@]11CCC3[C@@](C)(CCC[C@@]3(C)C(O)=O)[C@@H]1CC2

> <INCHI_IDENTIFIER>
InChI=1S/C22H32O4/c1-13-15-6-7-17-20(3)9-5-10-21(4,19(24)25)16(20)8-11-22(17,12-15)18(13)26-14(2)23/h15-18H,1,5-12H2,2-4H3,(H,24,25)/t15-,16?,17+,18-,20-,21-,22-/m1/s1

> <INCHI_KEY>
AQBQBBLJTDSVLC-GLVCVKOLSA-N

> <FORMULA>
C22H32O4

> <MOLECULAR_WEIGHT>
360.494

> <EXACT_MASS>
360.23005951

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
40.21779581080146

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,5R,9S,10S,13R,15R)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

> <JCHEM_LOGP>
4.174052567666669

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.442314334528426

> <JCHEM_PKA_STRONGEST_BASIC>
-7.015115671115915

> <JCHEM_POLAR_SURFACE_AREA>
63.6

> <JCHEM_REFRACTIVITY>
97.87659999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5R,9S,10S,13R,15R)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       0.202  -0.174   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.731   0.014   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.514   1.427   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.640   2.591   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.192   2.219   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.544   0.636   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.072   0.337   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.574   1.794   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.086   1.496   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.597   1.198   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.094  -0.259   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.081  -1.419   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.398  -2.216   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.525  -2.855   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.003  -3.092   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       9.490  -4.055   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       7.570  -1.121   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.564  -2.302   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.035  -2.009   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.401  -0.549   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.521   0.479   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.845  -1.178   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.512  -2.682   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       1.044  -3.146   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.712  -4.649   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -0.092  -2.106   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   22                                                  
CONECT    3    2    4   21                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8    9   17                                             
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   17                                             
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   12    7   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19    6   21   22                                             
CONECT   21   20    3                                                       
CONECT   22   20    2   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   58    0
END

View in JSmol

Synonyms

Value	Source
Xylopate	Generator
15-Acetoxykaur-16-en-18-Oic acid	MeSH

Chemical Formula

C₂₂H₃₂O₄

Average Mass

360.4940 Da

Monoisotopic Mass

360.23006 Da

IUPAC Name

(1R,5R,9S,10S,13R,15R)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

Traditional Name

(1R,5R,9S,10S,13R,15R)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecane-5-carboxylic acid

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@@H]1C(=C)[C@H]2C[C@@]11CCC3[C@@](C)(CCC[C@@]3(C)C(O)=O)[C@@H]1CC2

InChI Identifier

InChI=1S/C22H32O4/c1-13-15-6-7-17-20(3)9-5-10-21(4,19(24)25)16(20)8-11-22(17,12-15)18(13)26-14(2)23/h15-18H,1,5-12H2,2-4H3,(H,24,25)/t15-,16?,17+,18-,20-,21-,22-/m1/s1

InChI Key

AQBQBBLJTDSVLC-GLVCVKOLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Xylopia frutescens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Kaurane diterpenoids

Alternative Parents

Substituents

Kaurane diterpenoid
Dicarboxylic acid or derivatives
Carboxylic acid ester
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.17	ChemAxon
pKa (Strongest Acidic)	4.44	ChemAxon
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	97.88 m³·mol⁻¹	ChemAxon
Polarizability	40.22 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

34528846

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

49767002

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Soh D, Ernestine N, Tchana Satchet EM, Defokou UD, Schneider B, Giovanni V, Nyasse B: Antiproliferative activity of semisynthetic xylopic acid derivatives. Nat Prod Res. 2022 Mar;36(5):1288-1295. doi: 10.1080/14786419.2021.1876045. Epub 2021 Jan 25. [PubMed:33487063 ]
Koomson AE, Kukuia KKE, Amoateng P, Biney RP, Tagoe TA, Mensah JA, Ameyaw EO, Torbi J, Amponsah SK: Extract of Xylopia aethiopica and its kaurene diterpene, xylopic acid, improve learning and memory in mice. IBRO Neurosci Rep. 2022 Mar 29;12:249-259. doi: 10.1016/j.ibneur.2022.03.006. eCollection 2022 Jun. [PubMed:35746979 ]
Osafo N, Antwi AO, Otu-Boakye S: Xylopic Acid Suppresses Adjuvant-induced Arthritis in Sprague Dawley Rats via Reduction in Serum Levels of IL-6 and TNF-alpha. Antiinflamm Antiallergy Agents Med Chem. 2022;21(1):46-61. doi: 10.2174/1871523021666220310094218. [PubMed:35272600 ]
Boakye YD, Osafo N, Oppong-Kyekyeku J, Abotsi WKM, Boakye-Gyasi E, Heiss E, Agyare C: Regulation of Nrf2 and NF-kappaB activities may contribute to the anti-inflammatory mechanism of xylopic acid. Inflammopharmacology. 2022 Oct;30(5):1835-1841. doi: 10.1007/s10787-022-00950-y. Epub 2022 Mar 8. [PubMed:35260973 ]
Agbenyeku MA, Appiah-Opong R, Obese E, Biney RP, Adakudugu EA, Forkuo AD, Osei SA, Abeka MK, Ameyaw EO: In Vitro and In Vivo Effect of Xylopic Acid on Cytochrome P450 Enzymes. Adv Pharmacol Pharm Sci. 2022 Jan 21;2022:4524877. doi: 10.1155/2022/4524877. eCollection 2022. [PubMed:35098133 ]
Oso BJ, Olaoye IF, Omeike SO: Molecular Docking and ADMET Prediction of Natural Compounds towards SARS Spike Glycoprotein-Human Angiotensin-Converting Enzyme 2 and SARS-CoV-2 Main Protease. Arch Razi Inst. 2021 Sep 1;76(3):453-459. doi: 10.22092/ari.2020.351202.1517. eCollection 2021 Summer. [PubMed:34824739 ]
Biney RP, Benneh CK, Adongo DW, Ameyaw EO, Woode E: Evidence of an antidepressant-like effect of xylopic acid mediated by serotonergic mechanisms. Psychopharmacology (Berl). 2021 Aug;238(8):2105-2120. doi: 10.1007/s00213-021-05835-6. Epub 2021 Apr 10. [PubMed:33837810 ]
Osei SA, Biney RP, Obese E, Agbenyeku MA, Attah IY, Ameyaw EO, Boampong JN: Xylopic acid-amodiaquine and xylopic acid-artesunate combinations are effective in managing malaria in Plasmodium berghei-infected mice. Malar J. 2021 Feb 25;20(1):113. doi: 10.1186/s12936-021-03658-6. [PubMed:33632233 ]
Alolga RN, Opoku-Damoah Y, Alagpulinsa DA, Huang FQ, Ma G, Chavez Leon MASC, Kudzai C, Yin X, Ding Y: Metabolomic and transcriptomic analyses of the anti-rheumatoid arthritis potential of xylopic acid in a bioinspired lipoprotein nanoformulation. Biomaterials. 2021 Jan;268:120482. doi: 10.1016/j.biomaterials.2020.120482. Epub 2020 Nov 27. [PubMed:33307367 ]
Kyekyeku JO, Asare-Nkansah S, Bekoe SO, Sezgin S, Adosraku RK, Spiteller M: MALDI-HRMS imaging and HPLC-HRESI-MS(n) characterisation of kaurane diterpenes in the fruits of Xylopia aethiopica (Dunal) A. Rich (Annonaceae). Phytochem Anal. 2020 May;31(3):349-354. doi: 10.1002/pca.2901. Epub 2019 Dec 24. [PubMed:31875345 ]
Osafo N, Obiri DD, Danquah KO, Essel LB, Antwi AO: Potential effects of xylopic acid on acetic acid-induced ulcerative colitis in rats. Turk J Gastroenterol. 2019 Aug;30(8):732-744. doi: 10.5152/tjg.2019.18389. [PubMed:31418418 ]
Osafo N, Obiri DD, Antwi AO, Yeboah OK: The acute anti-inflammatory action of xylopic acid isolated from Xylopia aethiopica. J Basic Clin Physiol Pharmacol. 2018 Nov 27;29(6):659-669. doi: 10.1515/jbcpp-2018-0019. [PubMed:30052517 ]
Ameyaw EO, Asmah KB, Biney RP, Henneh IT, Owusu-Agyei P, Prah J, Forkuo AD: Isobolographic analysis of co-administration of two plant-derived antiplasmodial drug candidates, cryptolepine and xylopic acid, in Plasmodium berghei. Malar J. 2018 Apr 4;17(1):153. doi: 10.1186/s12936-018-2283-8. [PubMed:29618354 ]
Ekuadzi E, Biney RP, Benneh CK, Osei Amankwaa B, Jato J: Antiinflammatory properties of betulinic acid and xylopic acid in the carrageenan-induced pleurisy model of lung inflammation in mice. Phytother Res. 2018 Mar;32(3):480-487. doi: 10.1002/ptr.5993. Epub 2017 Dec 15. [PubMed:29243291 ]
Woode E, Ameyaw EO, Boakye-Gyasi E, Abotsi WK, Oppong Kyekyeku J, Adosraku R, Biney RP: Effects of an ethanol extract and the diterpene, xylopic acid, of Xylopia aethiopica fruits in murine models of musculoskeletal pain. Pharm Biol. 2016 Dec;54(12):2978-2986. doi: 10.1080/13880209.2016.1199040. Epub 2016 Jul 18. [PubMed:27430751 ]
Woode E, Ameyaw EO, Abotsi WK, Boakye-Gyasi E: An isobolographic analysis of the antinociceptive effect of xylopic acid in combination with morphine or diclofenac. J Basic Clin Pharm. 2015 Sep;6(4):103-8. doi: 10.4103/0976-0105.168055. [PubMed:26692735 ]
LOTUS database [Link]

Showing NP-Card for (1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid (NP0285439)

MOL for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D MOL for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D SDF for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D-SDF for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

PDB for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D PDB for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

SMILES for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

INCHI for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

Structure for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)

3D Structure for NP0285439 ((1r,5r,9s,10s,13r,15r)-15-(acetyloxy)-5,9-dimethyl-14-methylidenetetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecane-5-carboxylic acid)