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Showing NP-Card for 6-undecanol (NP0285341)

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Record Information
Version2.0
Created at2022-09-09 13:28:48 UTC
Updated at2022-09-09 13:28:48 UTC
NP-MRD IDNP0285341
Secondary Accession NumbersNone
Natural Product Identification
Common Name6-undecanol
Description6-UNDECANOL belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. 6-undecanol is found in Angelica gigas and Cichorium endivia. Based on a literature review very few articles have been published on 6-UNDECANOL.
Structure
Thumb
MOL3D MOLSDFPDBSMILESInChI

MOL for NP0285341 (6-undecanol)


  Mrv1652309092215282D          

 12 11  0  0  0  0            999 V2000
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
M  END
Download

3D MOL for NP0285341 (6-undecanol)

     RDKit          3D

 36 35  0  0  0  0  0  0  0  0999 V2000
    4.0157    1.7352    0.6493 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1230    0.8093   -0.5283 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7505    0.4035   -1.0229 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0264   -0.3013    0.1043 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6389   -0.7350   -0.3278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0785   -1.4373    0.8002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2207   -0.6176    1.9040 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3426   -2.1006    0.3625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3532   -1.1636   -0.2209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7984   -0.0871    0.7209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8214    0.7666   -0.0402 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1601    1.3488   -1.2536 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7794    1.1359    1.5593 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2087    2.4802    0.4645 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9533    2.3225    0.7733 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6612    1.3482   -1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6490   -0.1318   -0.2554 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9177   -0.2717   -1.8872 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1386    1.2868   -1.2955 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6543   -1.1706    0.4025 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9642    0.3512    0.9935 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0897    0.2142   -0.5754 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6799   -1.3583   -1.2197 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6169   -2.2677    1.1251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9266   -0.8784    2.5144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7784   -2.6643    1.1870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0772   -2.8349   -0.4304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2626   -1.7793   -0.4594 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0177   -0.7215   -1.1608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9580    0.6179    0.9470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2185   -0.4734    1.6622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6659    0.1190   -0.4082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2804    1.5277    0.6010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1007    1.5759   -1.0163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6316    2.2914   -1.5960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1748    0.6603   -2.1165 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
  1 13  1  0
  1 14  1  0
  1 15  1  0
  2 16  1  0
  2 17  1  0
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  5 22  1  0
  5 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 10 30  1  0
 10 31  1  0
 11 32  1  0
 11 33  1  0
 12 34  1  0
 12 35  1  0
 12 36  1  0
M  END
Download

3D SDF for NP0285341 (6-undecanol)


  Mrv1652309092215282D          

 12 11  0  0  0  0            999 V2000
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0285341

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C11H24O/c1-3-5-7-9-11(12)10-8-6-4-2/h11-12H,3-10H2,1-2H3

> <INCHI_KEY>
YBIXBBGRHOUVBB-UHFFFAOYSA-N

> <FORMULA>
C11H24O

> <MOLECULAR_WEIGHT>
172.312

> <EXACT_MASS>
172.182715393

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
23.273695926679824

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
undecan-6-ol

> <JCHEM_LOGP>
3.9672626906666673

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.484173081722343

> <JCHEM_PKA_STRONGEST_BASIC>
-1.274822694054647

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
54.082699999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
6-undecanol

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for NP0285341 (6-undecanol)

Download
PDB for NP0285341 (6-undecanol)
HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      13.241   6.105   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.575   5.335   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      14.575   3.795   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      17.242   5.335   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      19.909   5.335   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      21.243   6.105   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   22    0
END

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3D PDB for NP0285341 (6-undecanol)
Download
SMILES for NP0285341 (6-undecanol)
CCCCCC(O)CCCCC
Download
INCHI for NP0285341 (6-undecanol)
InChI=1S/C11H24O/c1-3-5-7-9-11(12)10-8-6-4-2/h11-12H,3-10H2,1-2H3
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View in JSmol
SynonymsNot Available
Chemical FormulaC11H24O
Average Mass172.3120 Da
Monoisotopic Mass172.18272 Da
IUPAC Nameundecan-6-ol
Traditional Name6-undecanol
CAS Registry NumberNot Available
SMILES
CCCCCC(O)CCCCC
InChI Identifier
InChI=1S/C11H24O/c1-3-5-7-9-11(12)10-8-6-4-2/h11-12H,3-10H2,1-2H3
InChI KeyYBIXBBGRHOUVBB-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Angelica gigasLOTUS Database
Cichorium endiviaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassFatty Acyls  
Sub ClassFatty alcohols  
Direct ParentFatty alcohols  
Alternative Parents
Substituents
  • Fatty alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.97ChemAxon
pKa (Strongest Acidic)18.48ChemAxon
pKa (Strongest Basic)-1.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity54.08 m³·mol⁻¹ChemAxon
Polarizability23.27 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID29719  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound32045  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]