NP-MRD: Showing NP-Card for 3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate (NP0285219)

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Record Information

Version

2.0

Created at

2022-09-09 13:17:32 UTC

Updated at

2022-09-09 13:17:32 UTC

NP-MRD ID

NP0285219

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate

Description

Sirodesmin A, also known as tan-1496 b, belongs to the class of organic compounds known as c-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a C-glycosidic bond. 3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate is found in Leptosphaeria maculans. Sirodesmin A is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161522132D          

 32 36  0  0  0  0            999 V2000
    6.8446   -0.2626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2921    0.3502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4717    0.2634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1356    1.0168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5229    0.4644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8082    0.8764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9459    0.7855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5326   -0.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9864   -0.7405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5866   -0.1016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1832   -0.8212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6047   -1.5304    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1402    0.4027    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.9267    1.1189    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.5099    1.5897    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2181    2.0620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9791    1.6835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1253    2.4955    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7996    1.7703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2116    2.4850    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7986    3.1992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9736    3.1987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2106    3.9140    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5428    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0756    2.2087    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    0.6899    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3337    0.6626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7484    1.5693    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6616    2.3897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4631    1.1573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9545    1.8199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2845    1.0802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  7 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  4 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 15 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  1  0  0  0  0
  4 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
  2 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
M  END

     RDKit          3D

 58 62  0  0  0  0  0  0  0  0999 V2000
   -3.1152    4.3226   -0.5104 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7064    2.9925   -0.9974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2600    2.4789   -1.9617 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7131    2.3109   -0.3919 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1997    1.0631   -0.7071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4202   -0.0130    0.3061 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0887   -0.7728    0.2955 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5312   -0.4587   -1.0554 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9707   -0.5014   -0.9962 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9515   -1.5279   -1.1423 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6666   -2.7229   -1.3395 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4121   -1.1635   -1.0559 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3005   -2.3264   -0.9760 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0939   -3.1031   -2.1384 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7162   -0.1205   -2.5392 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.2216    1.4269   -2.2742 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.4398    0.8669   -0.7179 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2415    1.6401   -0.3394 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1911    1.0124   -1.1990 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3672    1.4406   -2.4978 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4907    0.7384    0.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5015    1.4768    1.3155 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5046   -0.2554    0.0762 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.6116   -0.3242    1.0120 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7039    0.4173    1.5665 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7749   -0.2446    2.0807 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8546    0.6763    2.6127 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3156   -1.2030    1.0841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2355   -2.6433    1.5039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7420   -0.9119    0.6689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4551   -1.0093   -0.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4895   -1.5040   -1.2000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8875    4.4714    0.5657 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5741    5.1064   -1.1079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2047    4.5233   -0.6818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8118    0.7482   -1.5950 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5537   -0.5046    1.1319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2432   -1.8650    0.3250 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1042   -1.0817   -1.8536 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0172   -2.9521   -0.1264 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3417   -2.0082   -0.9918 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5651   -2.6313   -2.8663 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3051    2.7193   -0.5812 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0701    1.4703    0.7495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2814    1.0201   -3.1072 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2876   -0.1020    2.0371 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4559    0.3261    0.6998 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0146   -1.3633    1.0091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4221   -0.8424    2.9669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3936    1.2692    3.4355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3041    1.3020    1.8306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6688    0.0908    3.0852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5075   -3.2254    0.8941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0069   -2.6805    2.5795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2204   -3.1652    1.3829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9684   -1.6034   -0.1923 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8784    0.1065    0.2741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4800   -1.1864    1.4531 H   0  0  0  0  0  0  0  0  0  0  0  0
 27 26  1  0
 26 25  1  0
  6 25  1  1
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  1
 13 14  1  0
 12 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  1
 18 19  1  0
 19 20  1  6
 19  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
 17 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
  6 31  1  0
 31 32  2  0
 31 28  1  0
 28 29  1  0
 28 30  1  0
 28 26  1  0
  5  6  1  0
 19  8  1  0
 17  9  1  0
 23 12  1  0
 27 50  1  0
 27 51  1  0
 27 52  1  0
 26 49  1  1
  7 37  1  0
  7 38  1  0
  8 39  1  6
 13 40  1  0
 13 41  1  0
 14 42  1  0
 18 43  1  0
 18 44  1  0
 20 45  1  0
  5 36  1  6
  1 33  1  0
  1 34  1  0
  1 35  1  0
 24 46  1  0
 24 47  1  0
 24 48  1  0
 29 53  1  0
 29 54  1  0
 29 55  1  0
 30 56  1  0
 30 57  1  0
 30 58  1  0
M  END


  Mrv1533004161522132D          

 32 36  0  0  0  0            999 V2000
    6.8446   -0.2626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2921    0.3502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4717    0.2634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1356    1.0168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5229    0.4644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8082    0.8764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9459    0.7855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5326   -0.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9864   -0.7405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5866   -0.1016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1832   -0.8212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6047   -1.5304    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1402    0.4027    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.9267    1.1189    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.5099    1.5897    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2181    2.0620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9791    1.6835    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1253    2.4955    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7996    1.7703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2116    2.4850    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7986    3.1992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9736    3.1987    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2106    3.9140    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5428    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0756    2.2087    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    0.6899    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3337    0.6626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7484    1.5693    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6616    2.3897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4631    1.1573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9545    1.8199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2845    1.0802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  7 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  4 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 15 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  1  0  0  0  0
  4 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
  2 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0285219

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1OC2(CC3N4C(=O)C5(CO)SSC4(CC3(O)C2OC(C)=O)C(=O)N5C)C(=O)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C20H26N2O8S2/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,32-31-19)15(27)22(11)19/h9,11,13,23,28H,6-8H2,1-5H3

> <INCHI_KEY>
KTAIGLOGMSQPCG-UHFFFAOYSA-N

> <FORMULA>
C20H26N2O8S2

> <MOLECULAR_WEIGHT>
486.55

> <EXACT_MASS>
486.113058153

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
47.304192931366664

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecane]-4'-yl acetate

> <ALOGPS_LOGP>
0.50

> <JCHEM_LOGP>
0.7817401529999997

> <ALOGPS_LOGS>
-2.22

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.126789098305082

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.97569255274362

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1958775515347195

> <JCHEM_POLAR_SURFACE_AREA>
133.68

> <JCHEM_REFRACTIVITY>
112.7652

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.91e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecane]-4'-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      12.776  -0.490   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.745   0.654   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      10.214   0.492   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       9.587   1.898   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.443   0.867   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.109   1.636   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       5.499   1.466   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       4.727  -0.096   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.575  -1.382   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.962  -0.190   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.209  -1.533   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.996  -2.857   0.000  0.00  0.00           O+0
HETATM   13  S   UNK     0       3.995   0.752   0.000  0.00  0.00           S+0
HETATM   14  S   UNK     0       3.597   2.089   0.000  0.00  0.00           S+0
HETATM   15  C   UNK     0       4.685   2.967   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.007   3.849   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.428   3.143   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       7.701   4.658   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       8.959   3.305   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       9.728   4.639   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.957   5.972   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       7.417   5.971   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       9.727   7.306   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.880   2.854   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.008   4.123   0.000  0.00  0.00           O+0
HETATM   26  N   UNK     0       2.162   1.288   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0       0.623   1.237   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.730   2.929   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      10.568   4.461   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      12.064   2.160   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      12.982   3.397   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      13.598   2.016   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   30                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   19   28                                             
CONECT    5    4    6                                                       
CONECT    6    5    7   17                                                  
CONECT    7    6    8   15                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   13   26                                             
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13   10   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14    7   16   24                                             
CONECT   16   15   17                                                       
CONECT   17   16    6   18   19                                             
CONECT   18   17                                                            
CONECT   19   17    4   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   15   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   10   27                                                  
CONECT   27   26                                                            
CONECT   28    4   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28    2   31   32                                             
CONECT   31   30                                                            
CONECT   32   30                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   72    0
END

View in JSmol

Synonyms

Value	Source
Sirodesmin D	MeSH
Sirodesmin J	MeSH
Sirodesmin C	MeSH
Epipolythiopiperazine-2,5-dione	MeSH
Sirodesmin	MeSH
TAN-1496 b	MeSH
Sirodesmin b	MeSH
Sirodesmin g	MeSH
Sirodesmin F	MeSH
TAN 1496 b	MeSH
Sirodesmin e	MeSH
Sirodesmin H	MeSH
3'-Hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecane]-4'-yl acetic acid	Generator

Chemical Formula

C₂₀H₂₆N₂O₈S₂

Average Mass

486.5500 Da

Monoisotopic Mass

486.11306 Da

IUPAC Name

3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecane]-4'-yl acetate

Traditional Name

3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecane]-4'-yl acetate

CAS Registry Number

Not Available

SMILES

CC1OC2(CC3N4C(=O)C5(CO)SSC4(CC3(O)C2OC(C)=O)C(=O)N5C)C(=O)C1(C)C

InChI Identifier

InChI=1S/C20H26N2O8S2/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,32-31-19)15(27)22(11)19/h9,11,13,23,28H,6-8H2,1-5H3

InChI Key

KTAIGLOGMSQPCG-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Leptosphaeria maculans	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a C-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

C-glycosyl compounds

Alternative Parents

Substituents

C-glycosyl compound
Aryl ketone
Dihydropyridine
Hydroxypyridine
Pyridinone
Hydropyridine
Oxane
Pyridine
Alpha-branched alpha,beta-unsaturated-ketone
Acryloyl-group
Enone
Heteroaromatic compound
Tetrahydrofuran
Alpha,beta-unsaturated ketone
Vinylogous acid
Vinylogous amide
Secondary alcohol
Carboxamide group
Lactam
Ketone
Hemiacetal
Secondary carboxylic acid amide
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Azacycle
Ether
Dialkyl ether
Hydrocarbon derivative
Organopnictogen compound
Alcohol
Organic nitrogen compound
Organic oxide
Carbonyl group
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.5	ALOGPS
logP	0.78	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	12.98	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	133.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	112.77 m³·mol⁻¹	ChemAxon
Polarizability	47.3 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

325517

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate (NP0285219)

MOL for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D MOL for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D SDF for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D-SDF for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

PDB for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D PDB for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

SMILES for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

INCHI for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

Structure for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D Structure for NP0285219 (3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)