NP-MRD: Showing NP-Card for (3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate (NP0284644)

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Record Information

Version

2.0

Created at

2022-09-09 12:27:13 UTC

Updated at

2022-09-09 12:27:14 UTC

NP-MRD ID

NP0284644

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate

Description

(3AR,4R,6E,9S,10Z,11aS)-3a,4,5,8,9,11a-Hexahydro-4-[[(Z)-2-(hydroxymethyl)-4-hydroxy-2-butenoyl]oxy]-9-acetoxy-6,10-dimethyl-3-methylenecyclodeca[b]furan-2(3H)-one belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. (3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate is found in Schkuhria pinnata. Based on a literature review very few articles have been published on (3aR,4R,6E,9S,10Z,11aS)-3a,4,5,8,9,11a-Hexahydro-4-[[(Z)-2-(hydroxymethyl)-4-hydroxy-2-butenoyl]oxy]-9-acetoxy-6,10-dimethyl-3-methylenecyclodeca[b]furan-2(3H)-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309092214272D          

 30 31  0  0  1  0            999 V2000
    0.2172   -2.7827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4791   -2.0004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.3287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8249   -1.3214    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4908   -0.6656    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2732   -0.9274    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7639   -0.2643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5508   -0.0162    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5580    0.8087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3331   -0.2781    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8239    0.3851    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4950    1.1417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9858    1.8048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6753    1.2351    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8121   -0.9498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3214   -1.6129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3141   -2.4379    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9772   -2.9287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5273   -2.6859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449   -2.4240    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2541   -3.0872    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5830   -3.8438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4027   -3.9372    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0923   -4.5069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4212   -5.2635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2409   -5.3570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5698   -6.1136    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2726   -4.4135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2182   -5.0766    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2659   -1.7524    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 24 28  1  0  0  0  0
 28 29  1  0  0  0  0
 20 30  1  0  0  0  0
 30  2  1  1  0  0  0
  6 30  1  0  0  0  0
M  END


  Mrv1652309092214272D          

 30 31  0  0  1  0            999 V2000
    0.2172   -2.7827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4791   -2.0004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.3287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8249   -1.3214    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4908   -0.6656    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2732   -0.9274    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7639   -0.2643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5508   -0.0162    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5580    0.8087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3331   -0.2781    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8239    0.3851    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4950    1.1417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9858    1.8048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6753    1.2351    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8121   -0.9498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3214   -1.6129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3141   -2.4379    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9772   -2.9287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5273   -2.6859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449   -2.4240    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2541   -3.0872    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5830   -3.8438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4027   -3.9372    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0923   -4.5069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4212   -5.2635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2409   -5.3570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5698   -6.1136    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2726   -4.4135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2182   -5.0766    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2659   -1.7524    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 24 28  1  0  0  0  0
 28 29  1  0  0  0  0
 20 30  1  0  0  0  0
 30  2  1  1  0  0  0
  6 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0284644

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1C\C=C(C)\C[C@@H](OC(=O)C(\CO)=C/CO)[C@@H]2[C@@H](OC(=O)C2=C)\C=C1\C

> <INCHI_IDENTIFIER>
InChI=1S/C22H28O8/c1-12-5-6-17(28-15(4)25)13(2)10-19-20(14(3)21(26)29-19)18(9-12)30-22(27)16(11-24)7-8-23/h5,7,10,17-20,23-24H,3,6,8-9,11H2,1-2,4H3/b12-5+,13-10-,16-7-/t17-,18+,19-,20+/m0/s1

> <INCHI_KEY>
XYPJAWWDSQFSQA-DEUHMGDLSA-N

> <FORMULA>
C22H28O8

> <MOLECULAR_WEIGHT>
420.458

> <EXACT_MASS>
420.178417862

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
42.45406542162374

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3aR,4R,9S,11aS)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-4-yl (2Z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate

> <JCHEM_LOGP>
1.3327141113333325

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.648577036263198

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.791780275384095

> <JCHEM_PKA_STRONGEST_BASIC>
-2.557857287039238

> <JCHEM_POLAR_SURFACE_AREA>
119.36000000000001

> <JCHEM_REFRACTIVITY>
109.56329999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3aR,4R,9S,11aS)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-4-yl (2Z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       0.405  -5.194   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.894  -3.734   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -2.480   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.540  -2.467   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       0.916  -1.242   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.377  -1.731   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.293  -0.493   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.761  -0.030   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.775   1.510   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.222  -0.519   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.138   0.719   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       6.524   2.131   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.440   3.369   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.994   2.306   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       7.116  -1.773   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.200  -3.011   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.186  -4.551   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.424  -5.467   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.718  -5.014   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.257  -4.525   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.341  -5.763   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.955  -7.175   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       4.485  -7.350   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.039  -8.413   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.653  -9.825   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.183 -10.000   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.797 -11.412   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       0.509  -8.238   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -0.407  -9.476   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       2.363  -3.271   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   30                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   30                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   10   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   30                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   28                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   24   29                                                       
CONECT   29   28                                                            
CONECT   30   20    2    6                                                  
MASTER        0    0    0    0    0    0    0    0   30    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₂₈O₈

Average Mass

420.4580 Da

Monoisotopic Mass

420.17842 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1C\C=C(C)\C[C@@H](OC(=O)C(\CO)=C/CO)[C@@H]2[C@@H](OC(=O)C2=C)\C=C1\C

InChI Identifier

InChI=1S/C22H28O8/c1-12-5-6-17(28-15(4)25)13(2)10-19-20(14(3)21(26)29-19)18(9-12)30-22(27)16(11-24)7-8-23/h5,7,10,17-20,23-24H,3,6,8-9,11H2,1-2,4H3/b12-5+,13-10-,16-7-/t17-,18+,19-,20+/m0/s1

InChI Key

XYPJAWWDSQFSQA-DEUHMGDLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Schkuhria pinnata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Germacranolides and derivatives

Alternative Parents

Substituents

Germacranolide
Germacrane sesquiterpenoid
Sesquiterpenoid
Tricarboxylic acid or derivatives
Beta-hydroxy acid
Fatty acid ester
Gamma butyrolactone
Fatty acyl
Hydroxy acid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Lactone
Carboxylic acid ester
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Primary alcohol
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101921664

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate (NP0284644)

MOL for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

3D MOL for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

3D SDF for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

3D-SDF for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

PDB for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

3D PDB for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

SMILES for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

INCHI for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

Structure for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)

3D Structure for NP0284644 ((3ar,4r,9s,11as)-9-(acetyloxy)-6,10-dimethyl-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-4-yl (2z)-4-hydroxy-2-(hydroxymethyl)but-2-enoate)