NP-MRD: Showing NP-Card for octadec-1-yne (NP0284539)

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Record Information

Version

2.0

Created at

2022-09-09 12:17:00 UTC

Updated at

2022-09-09 12:17:00 UTC

NP-MRD ID

NP0284539

Secondary Accession Numbers

None

Natural Product Identification

Common Name

octadec-1-yne

Description

1-Octadecyne belongs to the class of organic compounds known as acetylides. Acetylides are compounds arising by replacement of one or both hydrogen atoms of acetylene (ethyne) by a metal or other cationic group. E.G. NaC#CH monosodium acetylide. By extension, analogous compounds derived from terminal acetylenes, RC#CH. The class is limited here to derivatives of acetylene where the hydrogen atom is replaced with an element with similar or lower electronegativity that carbon. octadec-1-yne is found in Lonicera japonica. octadec-1-yne was first documented in 2014 (PMID: 24825533). Based on a literature review very few articles have been published on 1-Octadecyne (PMID: 30868211).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 52 51  0  0  0  0  0  0  0  0999 V2000
   -8.2800   -1.3475    0.5776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4032   -0.9159   -0.1389 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3451   -0.4157   -1.0086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7565    0.8806   -0.4940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1738    0.6724    0.8764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0953   -0.3415    0.8953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9152   -0.0465    0.0323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2032    1.2269    0.3767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0279    1.5152   -0.4873 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0468    0.4660   -0.4467 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6243    0.2558    0.9192 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6844   -0.8195    0.8359 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8005   -0.4668   -0.0901 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8280   -1.6029   -0.1112 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9702   -1.2885   -1.0327 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7208   -0.0529   -0.6595 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3200   -0.1565    0.7291 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0574    1.1419    1.0114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0447   -1.7168    1.2126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8020   -0.2878   -2.0115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5866   -1.2099   -1.1210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9614    1.1636   -1.2393 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5511    1.6374   -0.5162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9128    1.6283    1.3778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0190    0.2557    1.5036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5121   -1.3242    0.5975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7921   -0.4860    1.9740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1891   -0.8790    0.1721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1810   -0.0341   -1.0428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9089    2.0759    0.2610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9022    1.2003    1.4526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    1.5405   -1.5528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6457    2.5119   -0.2760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2782   -0.4768   -0.9162 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8771    0.8697   -1.0921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1213    0.0509    1.6921 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1745    1.1773    1.2748 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2064   -1.7766    0.4922 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0795   -1.0501    1.8506 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2551    0.5040    0.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4184   -0.4447   -1.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2969   -2.4869   -0.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2482   -1.7700    0.8989 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6433   -1.1767   -2.0935 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6643   -2.1374   -1.0106 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5823    0.0377   -1.3596 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0591    0.8172   -0.7610 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5774   -0.3234    1.5142 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0880   -0.9573    0.6943 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7738    1.3416    0.1872 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3639    1.9893    1.1192 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6446    1.0315    1.9450 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  3  0
 18 50  1  0
 18 51  1  0
 18 52  1  0
 17 48  1  0
 17 49  1  0
 16 46  1  0
 16 47  1  0
 15 44  1  0
 15 45  1  0
 14 42  1  0
 14 43  1  0
 13 40  1  0
 13 41  1  0
 12 38  1  0
 12 39  1  0
 11 36  1  0
 11 37  1  0
 10 34  1  0
 10 35  1  0
  9 32  1  0
  9 33  1  0
  8 30  1  0
  8 31  1  0
  7 28  1  0
  7 29  1  0
  6 26  1  0
  6 27  1  0
  5 24  1  0
  5 25  1  0
  4 22  1  0
  4 23  1  0
  3 20  1  0
  3 21  1  0
  1 19  1  0
M  END


  Mrv1652309092214172D          

 18 17  0  0  0  0            999 V2000
    7.2336    5.8263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9480    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6625    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3770    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0914    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8059    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5204    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2349    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9493    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6638    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3783    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0927    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8072    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5217    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2362    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9506    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6651    5.0013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3796    5.4138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0284539

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCCCCC#C

> <INCHI_IDENTIFIER>
InChI=1S/C18H34/c1-3-5-7-9-11-13-15-17-18-16-14-12-10-8-6-4-2/h1H,4-18H2,2H3

> <INCHI_KEY>
IYDNQWWOZQLMRH-UHFFFAOYSA-N

> <FORMULA>
C18H34

> <MOLECULAR_WEIGHT>
250.47

> <EXACT_MASS>
250.266051095

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
36.11527724371609

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
octadec-1-yne

> <JCHEM_LOGP>
7.6588071090000005

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
83.08179999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
octadec-1-yne

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0      13.503  10.876   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.836  10.106   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      16.170   9.336   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      17.504  10.106   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      18.837   9.336   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      20.171  10.106   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      21.505   9.336   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      22.838  10.106   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      24.172   9.336   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      25.506  10.106   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      26.839   9.336   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      28.173  10.106   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      29.507   9.336   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      30.840  10.106   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      32.174   9.336   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      33.508  10.106   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      34.842   9.336   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      36.175  10.106   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₃₄

Average Mass

250.4700 Da

Monoisotopic Mass

250.26605 Da

IUPAC Name

octadec-1-yne

Traditional Name

octadec-1-yne

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCCC#C

InChI Identifier

InChI=1S/C18H34/c1-3-5-7-9-11-13-15-17-18-16-14-12-10-8-6-4-2/h1H,4-18H2,2H3

InChI Key

IYDNQWWOZQLMRH-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lonicera japonica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acetylides. Acetylides are compounds arising by replacement of one or both hydrogen atoms of acetylene (ethyne) by a metal or other cationic group. E.G. NaC#CH monosodium acetylide. By extension, analogous compounds derived from terminal acetylenes, RC#CH. The class is limited here to derivatives of acetylene where the hydrogen atom is replaced with an element with similar or lower electronegativity that carbon.

Kingdom

Organic compounds

Super Class

Acetylides

Class

Not Available

Sub Class

Not Available

Direct Parent

Acetylides

Alternative Parents

Substituents

Acetylide
Monosubstituted alkyne
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Alkyne
Acyclic acetylene
Acetylene
Hydrocarbon
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.66	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	83.08 m³·mol⁻¹	ChemAxon
Polarizability	36.12 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

62633

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

69425

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Armstrong L, Vaz MGMV, Genuario DB, Fiore MF, Debonsi HM: Volatile Compounds Produced by Cyanobacteria Isolated from Mangrove Environment. Curr Microbiol. 2019 May;76(5):575-582. doi: 10.1007/s00284-019-01658-z. Epub 2019 Mar 13. [PubMed:30868211 ]
Bhairamadgi NS, Pujari SP, Trovela FG, Debrassi A, Khamis AA, Alonso JM, Al Zahrani AA, Wennekes T, Al-Turaif HA, van Rijn C, Alhamed YA, Zuilhof H: Hydrolytic and thermal stability of organic monolayers on various inorganic substrates. Langmuir. 2014 May 27;30(20):5829-39. doi: 10.1021/la500533f. Epub 2014 May 13. [PubMed:24825533 ]
LOTUS database [Link]

Showing NP-Card for octadec-1-yne (NP0284539)

MOL for NP0284539 (octadec-1-yne)

3D MOL for NP0284539 (octadec-1-yne)

3D SDF for NP0284539 (octadec-1-yne)

3D-SDF for NP0284539 (octadec-1-yne)

PDB for NP0284539 (octadec-1-yne)

3D PDB for NP0284539 (octadec-1-yne)

SMILES for NP0284539 (octadec-1-yne)

INCHI for NP0284539 (octadec-1-yne)

Structure for NP0284539 (octadec-1-yne)

3D Structure for NP0284539 (octadec-1-yne)