NP-MRD: Showing NP-Card for [4-(pyrrolidin-1-yl)phenyl]acetic acid (NP0284255)

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Record Information

Version

1.0

Created at

2022-09-09 11:52:32 UTC

Updated at

2022-09-09 11:52:32 UTC

NP-MRD ID

NP0284255

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[4-(pyrrolidin-1-yl)phenyl]acetic acid

Description

26586-36-7 Belongs to the class of organic compounds known as phenylpyrrolidines. These are polycyclic aromatic compounds containing a benzene ring linked to a pyrrolidine ring through a CC or CN bond. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms. [4-(pyrrolidin-1-yl)phenyl]acetic acid is found in Senecio scandens. It was first documented in 2022 (PMID: 36113990). Based on a literature review a significant number of articles have been published on 26586-36-7 (PMID: 36113989) (PMID: 36113988) (PMID: 36113987) (PMID: 36113986).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 31  0  0  0  0  0  0  0  0999 V2000
    3.9476   -1.4238   -0.8131 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5895   -0.5965   -0.1406 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9730   -0.5710   -0.0403 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8352    0.4352    0.6075 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3677    0.2867    0.4081 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5857   -0.4924    1.2280 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2290   -0.6482    1.0681 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4174   -0.0001    0.0360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8039   -0.1088   -0.1944 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7037   -0.8985    0.6092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0181   -0.1926    0.4042 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9829    0.0860   -1.0853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5316    0.5424   -1.2542 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3588    0.7920   -0.8027 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7163    0.9327   -0.6225 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4655    0.3226   -0.0949 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1160    0.4885    1.6791 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0983    1.4375    0.1787 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1048   -1.0016    2.0419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3561   -1.2631    1.7239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7863   -1.8945    0.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4032   -0.9589    1.6685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8769   -0.8448    0.6496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0539    0.7789    0.9145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2095   -0.8065   -1.6725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6899    0.9178   -1.2829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2216    0.1599   -2.2564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4629    1.6527   -1.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1553    1.3102   -1.6271 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2857    1.5583   -1.2967 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
  2  1  2  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8 14  1  0
 14 15  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 15  5  1  0
 13  9  1  0
  3 16  1  0
  4 17  1  0
  4 18  1  0
  6 19  1  0
  7 20  1  0
 14 29  1  0
 15 30  1  0
 10 21  1  0
 10 22  1  0
 11 23  1  0
 11 24  1  0
 12 25  1  0
 12 26  1  0
 13 27  1  0
 13 28  1  0
M  END


  Mrv1652309092213522D          

 15 16  0  0  0  0            999 V2000
   -0.0000    8.0036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    7.1786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    6.7661    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    6.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    5.9411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    5.5286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    4.7036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    4.2911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    3.4661    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3819    2.9812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    2.1965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    2.1965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0470    2.9812    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.7036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    5.5286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 13  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  2  0  0  0  0
  5 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0284255

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(=O)CC1=CC=C(C=C1)N1CCCC1

> <INCHI_IDENTIFIER>
InChI=1S/C12H15NO2/c14-12(15)9-10-3-5-11(6-4-10)13-7-1-2-8-13/h3-6H,1-2,7-9H2,(H,14,15)

> <INCHI_KEY>
ZFNIWSXJLHQUHT-UHFFFAOYSA-N

> <FORMULA>
C12H15NO2

> <MOLECULAR_WEIGHT>
205.257

> <EXACT_MASS>
205.110278727

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
22.617026566173383

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[4-(pyrrolidin-1-yl)phenyl]acetic acid

> <JCHEM_LOGP>
1.3194882868683213

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.48497370763399

> <JCHEM_PKA_STRONGEST_BASIC>
5.2164012606559025

> <JCHEM_POLAR_SURFACE_AREA>
40.54

> <JCHEM_REFRACTIVITY>
59.335200000000015

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[4-(pyrrolidin-1-yl)phenyl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  O   UNK     0      -0.000  14.940   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -0.000  13.400   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.334  12.630   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.334  12.630   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  11.090   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  10.320   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   8.780   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   8.010   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       1.334   6.470   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       2.580   5.565   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.104   4.100   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.564   4.100   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.088   5.565   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   8.780   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.000  10.320   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   15                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10   13                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    9                                                       
CONECT   14    8   15                                                       
CONECT   15   14    5                                                       
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₁₅NO₂

Average Mass

205.2570 Da

Monoisotopic Mass

205.11028 Da

IUPAC Name

2-[4-(pyrrolidin-1-yl)phenyl]acetic acid

Traditional Name

[4-(pyrrolidin-1-yl)phenyl]acetic acid

CAS Registry Number

Not Available

SMILES

OC(=O)CC1=CC=C(C=C1)N1CCCC1

InChI Identifier

InChI=1S/C12H15NO2/c14-12(15)9-10-3-5-11(6-4-10)13-7-1-2-8-13/h3-6H,1-2,7-9H2,(H,14,15)

InChI Key

ZFNIWSXJLHQUHT-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Senecio scandens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenylpyrrolidines. These are polycyclic aromatic compounds containing a benzene ring linked to a pyrrolidine ring through a CC or CN bond. Pyrrolidine is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolidines

Sub Class

Phenylpyrrolidines

Direct Parent

Phenylpyrrolidines

Alternative Parents

Substituents

1-phenylpyrrolidine
Tertiary aliphatic/aromatic amine
Dialkylarylamine
Aniline or substituted anilines
Monocyclic benzene moiety
Benzenoid
Pyrrole
Amino acid
Tertiary amine
Amino acid or derivatives
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Azacycle
Hydrocarbon derivative
Organic oxide
Amine
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Carbonyl group
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.32	ChemAxon
pKa (Strongest Acidic)	4.48	ChemAxon
pKa (Strongest Basic)	5.22	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	40.54 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	59.34 m³·mol⁻¹	ChemAxon
Polarizability	22.62 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

16193230

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14154587

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Concha-Miranda M, Tang W, Hartmann K, Brecht M: Large-scale mapping of vocalization-related activity in the functionally diverse nuclei in rat posterior brainstem. J Neurosci. 2022 Sep 16. pii: JNEUROSCI.0813-22.2022. doi: 10.1523/JNEUROSCI.0813-22.2022. [PubMed:36113990 ]
Kausto J, Gluschkoff K, Turunen J, Selinheimo S, Peutere L, Vaananen A: Psychotherapy and change in mental health-related work disability: a prospective Finnish population-level register-based study with a quasi-experimental design. J Epidemiol Community Health. 2022 Sep 16. pii: jech-2022-218941. doi: 10.1136/jech-2022-218941. [PubMed:36113989 ]
Meulemans L, Baert Desurmont S, Waill MC, Castelain G, Killian A, Hauchard J, Frebourg T, Coulet F, Martins A, Muleris M, Gaildrat P: Comprehensive RNA and protein functional assessments contribute to the clinical interpretation of MSH2 variants causing in-frame splicing alterations. J Med Genet. 2022 Sep 16. pii: jmg-2022-108576. doi: 10.1136/jmg-2022-108576. [PubMed:36113988 ]
Otsuji S, Nishio Y, Tsujita M, Rio M, Huber C, Anton-Plagaro C, Mizuno S, Kawano Y, Miyatake S, Simon M, van Binsbergen E, van Jaarsveld RH, Matsumoto N, Cormier-Daire V, J Cullen P, Saitoh S, Kato K: Clinical diversity and molecular mechanism of VPS35L-associated Ritscher-Schinzel syndrome. J Med Genet. 2022 Sep 16. pii: jmg-2022-108602. doi: 10.1136/jmg-2022-108602. [PubMed:36113987 ]
Crul M, Breukels O: Safe handling of cytostatic drugs: recommendations from independent science. Eur J Hosp Pharm. 2022 Sep 16. pii: ejhpharm-2022-003469. doi: 10.1136/ejhpharm-2022-003469. [PubMed:36113986 ]
LOTUS database [Link]

Showing NP-Card for [4-(pyrrolidin-1-yl)phenyl]acetic acid (NP0284255)

MOL for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

3D MOL for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

3D SDF for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

3D-SDF for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

PDB for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

3D PDB for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

SMILES for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

INCHI for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

Structure for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)

3D Structure for NP0284255 ([4-(pyrrolidin-1-yl)phenyl]acetic acid)