NP-MRD: Showing NP-Card for 4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate (NP0284235)

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Record Information

Version

2.0

Created at

2022-09-09 11:50:59 UTC

Updated at

2022-09-09 11:51:00 UTC

NP-MRD ID

NP0284235

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate

Description

4,5-Dihydroxy-6-methyl-2-({1,1,2,5-tetramethyl-decahydro-1H-cyclopropa[e]azulen-5-yl}oxy)oxan-3-yl 3-methylpent-2-enoate belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone. 4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate is found in Calendula arvensis. 4,5-Dihydroxy-6-methyl-2-({1,1,2,5-tetramethyl-decahydro-1H-cyclopropa[e]azulen-5-yl}oxy)oxan-3-yl 3-methylpent-2-enoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251513452D          

 33 36  0  0  0  0            999 V2000
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  3 33  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1533004251513452D          

 33 36  0  0  0  0            999 V2000
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 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 18 29  1  0  0  0  0
 24 29  1  0  0  0  0
 23 30  1  0  0  0  0
 22 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
  3 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0284235

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)=CC(=O)OC1C(O)C(O)C(C)OC1OC1(C)CCC2C(C3C(C)CCC13)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C27H44O6/c1-8-14(2)13-19(28)32-24-23(30)22(29)16(4)31-25(24)33-27(7)12-11-18-21(26(18,5)6)20-15(3)9-10-17(20)27/h13,15-18,20-25,29-30H,8-12H2,1-7H3

> <INCHI_KEY>
UQUYXFBISSCISA-UHFFFAOYSA-N

> <FORMULA>
C27H44O6

> <MOLECULAR_WEIGHT>
464.643

> <EXACT_MASS>
464.313789137

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
52.89834221064176

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-decahydro-1H-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate

> <ALOGPS_LOGP>
3.39

> <JCHEM_LOGP>
4.959893422000002

> <ALOGPS_LOGS>
-4.57

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.18188802626393

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.738491888373837

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6129125763339873

> <JCHEM_POLAR_SURFACE_AREA>
85.22000000000001

> <JCHEM_REFRACTIVITY>
125.82529999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.24e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1aH-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       1.026  12.675   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.211  11.147   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.627  10.542   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.812   9.014   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.229   8.409   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.460   9.334   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       4.414   6.880   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.830   6.276   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.062   7.201   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.877   8.730   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       8.478   6.597   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       9.710   7.521   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       8.663   5.068   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.080   4.464   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.432   4.143   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.015   4.747   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.784   3.823   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.969   2.294   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.437   2.454   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.418   2.815   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.729   2.006   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.914   0.477   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.834  -0.621   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.302  -0.461   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.325  -1.651   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.713  -3.141   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.891  -1.090   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.982   0.448   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.472   0.836   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       8.325  -1.007   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.604  -2.521   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.843  -1.262   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.859  11.467   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   33                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   16                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15    8   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20   29                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   30                                                  
CONECT   23   22   24   30                                                  
CONECT   24   23   25   29                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   18   24                                                  
CONECT   30   23   22   31   32                                             
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33    3                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Value	Source
4,5-Dihydroxy-6-methyl-2-({1,1,2,5-tetramethyl-decahydro-1H-cyclopropa[e]azulen-5-yl}oxy)oxan-3-yl 3-methylpent-2-enoic acid	Generator

Chemical Formula

C₂₇H₄₄O₆

Average Mass

464.6430 Da

Monoisotopic Mass

464.31379 Da

IUPAC Name

4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-decahydro-1H-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate

Traditional Name

4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1aH-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate

CAS Registry Number

Not Available

SMILES

CCC(C)=CC(=O)OC1C(O)C(O)C(C)OC1OC1(C)CCC2C(C3C(C)CCC13)C2(C)C

InChI Identifier

InChI=1S/C27H44O6/c1-8-14(2)13-19(28)32-24-23(30)22(29)16(4)31-25(24)33-27(7)12-11-18-21(26(18,5)6)20-15(3)9-10-17(20)27/h13,15-18,20-25,29-30H,8-12H2,1-7H3

InChI Key

UQUYXFBISSCISA-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Calendula arvensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Terpene glycosides

Alternative Parents

Substituents

Terpene glycoside
Aromadendrane sesquiterpenoid
Guaiane sesquiterpenoid
5,10-cycloaromadendrane sesquiterpenoid
Sesquiterpenoid
Glycosyl compound
O-glycosyl compound
Fatty acid ester
Fatty acyl
Monosaccharide
Oxane
Alpha,beta-unsaturated carboxylic ester
Enoate ester
1,2-diol
Carboxylic acid ester
Secondary alcohol
Monocarboxylic acid or derivatives
Oxacycle
Acetal
Carboxylic acid derivative
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Alcohol
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.39	ALOGPS
logP	4.96	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	12.74	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	85.22 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	125.83 m³·mol⁻¹	ChemAxon
Polarizability	52.9 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

72727945

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate (NP0284235)

MOL for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

3D MOL for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

3D SDF for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

3D-SDF for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

PDB for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

3D PDB for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

SMILES for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

INCHI for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

Structure for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)

3D Structure for NP0284235 (4,5-dihydroxy-6-methyl-2-({1,1,4,7-tetramethyl-octahydro-1ah-cyclopropa[e]azulen-4-yl}oxy)oxan-3-yl 3-methylpent-2-enoate)