NP-MRD: Showing NP-Card for (1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione (NP0284145)

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Record Information

Version

2.0

Created at

2022-09-09 11:43:16 UTC

Updated at

2022-09-09 11:43:16 UTC

NP-MRD ID

NP0284145

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione

Description

Bisorbicillinol belongs to the class of organic compounds known as cyclohexenones. Cyclohexenones are compounds containing a cylohexenone moiety, which is a six-membered aliphatic ring that carries a ketone and has one endocyclic double bond. (1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione was first documented in 2005 (PMID: 15861438). Based on a literature review a small amount of articles have been published on bisorbicillinol (PMID: 29104566) (PMID: 21301186) (PMID: 30711393) (PMID: 17190466).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092213432D          

 36 38  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309092213432D          

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 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 20 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
  8 30  1  0  0  0  0
 30 31  1  6  0  0  0
 30 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
 19 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0284145

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C\C=C\C(\O)=C1\[C@@H]2[C@@H]3[C@](C)(O)C(O)=C(C)C(=O)[C@]3(C(=O)\C=C\C=C\C)[C@](C)(C1=O)C(=O)[C@@]2(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C28H32O8/c1-7-9-11-13-16(29)18-19-20-27(6,36)21(31)15(3)22(32)28(20,17(30)14-12-10-8-2)25(4,23(18)33)24(34)26(19,5)35/h7-14,19-20,29,31,35-36H,1-6H3/b9-7+,10-8+,13-11+,14-12+,18-16+/t19-,20-,25-,26+,27+,28-/m1/s1

> <INCHI_KEY>
VNCFIIWODJHVEC-PKIOSQTMSA-N

> <FORMULA>
C28H32O8

> <MOLECULAR_WEIGHT>
496.556

> <EXACT_MASS>
496.20971799

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
51.77975770233293

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,6S,7S,8S,9S,12E)-2-[(2E,4E)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0^{2,7}]dodec-4-ene-3,10,11-trione

> <JCHEM_LOGP>
3.2783070510000005

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.33024993588946

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.5936599099324344

> <JCHEM_PKA_STRONGEST_BASIC>
-3.4809324660291443

> <JCHEM_POLAR_SURFACE_AREA>
149.2

> <JCHEM_REFRACTIVITY>
140.46470000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,6S,7S,8S,9S,12E)-2-[(2E,4E)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2E,4E)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0^{2,7}]dodec-4-ene-3,10,11-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       8.170   7.558   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.024   6.529   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.560   7.007   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.414   5.978   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.732   4.471   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.422   3.295   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.691   3.863   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       3.682   1.474   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.022   2.233   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.043   3.674   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       6.349   1.453   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.914   2.023   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.337  -0.087   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       7.884  -0.625   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.997  -0.847   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.031  -2.170   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       4.289  -2.393   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.980   0.240   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.330  -0.825   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.003  -0.045   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.303  -1.137   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.681  -2.714   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -1.920  -1.180   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -2.725   0.132   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -4.265   0.091   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -5.070   1.403   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -6.610   1.362   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.170   1.648   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -0.060   2.767   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       2.355   2.255   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.615   4.158   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.090   1.230   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.264   1.061   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       2.082   0.203   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       3.186   0.729   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       3.545  -0.855   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   18   30                                             
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17   18                                             
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   15    8   19                                                  
CONECT   19   18   20   34                                                  
CONECT   20   19   21   28                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   20   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28    8   31   32                                             
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   19   35   36                                             
CONECT   35   34                                                            
CONECT   36   34                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₂O₈

Average Mass

496.5560 Da

Monoisotopic Mass

496.20972 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C\C=C\C=C\C(\O)=C1\[C@@H]2[C@@H]3[C@](C)(O)C(O)=C(C)C(=O)[C@]3(C(=O)\C=C\C=C\C)[C@](C)(C1=O)C(=O)[C@@]2(C)O

InChI Identifier

InChI=1S/C28H32O8/c1-7-9-11-13-16(29)18-19-20-27(6,36)21(31)15(3)22(32)28(20,17(30)14-12-10-8-2)25(4,23(18)33)24(34)26(19,5)35/h7-14,19-20,29,31,35-36H,1-6H3/b9-7+,10-8+,13-11+,14-12+,18-16+/t19-,20-,25-,26+,27+,28-/m1/s1

InChI Key

VNCFIIWODJHVEC-PKIOSQTMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclohexenones. Cyclohexenones are compounds containing a cylohexenone moiety, which is a six-membered aliphatic ring that carries a ketone and has one endocyclic double bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Cyclohexenones

Alternative Parents

Substituents

Cyclohexenone
Acyloin
Vinylogous acid
Alpha,beta-unsaturated ketone
Tertiary alcohol
Enone
Cyclic alcohol
Acryloyl-group
Polyol
Enol
Organic oxide
Hydrocarbon derivative
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101031465

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Derntl C, Guzman-Chavez F, Mello-de-Sousa TM, Busse HJ, Driessen AJM, Mach RL, Mach-Aigner AR: In Vivo Study of the Sorbicillinoid Gene Cluster in Trichoderma reesei. Front Microbiol. 2017 Oct 20;8:2037. doi: 10.3389/fmicb.2017.02037. eCollection 2017. [PubMed:29104566 ]
Hong R, Chen Y, Deng L: Catalytic enantioselective total syntheses of bisorbicillinolide, bisorbicillinol, and bisorbibutenolide. Angew Chem Int Ed Engl. 2005 May 30;44(22):3478-81. doi: 10.1002/anie.200500480. [PubMed:15861438 ]
Kang D, Kim J, Choi JN, Liu KH, Lee CH: Chemotaxonomy of Trichoderma spp. Using mass spectrometry-based metabolite profiling. J Microbiol Biotechnol. 2011 Jan;21(1):5-13. doi: 10.4014/jmb.1008.08018. [PubMed:21301186 ]
Sugaya K, Terajima T, Takahashi A, Onose JI, Abe N: Bisorbicillinol inhibits Lyn tyrosine kinase for allergic response on RBL-2H3 cells. Bioorg Med Chem Lett. 2019 Mar 15;29(6):832-835. doi: 10.1016/j.bmcl.2019.01.019. Epub 2019 Jan 19. [PubMed:30711393 ]
Cabrera GM, Butler M, Rodriguez MA, Godeas A, Haddad R, Eberlin MN: A sorbicillinoid urea from an intertidal Paecilomyces marquandii. J Nat Prod. 2006 Dec;69(12):1806-8. doi: 10.1021/np060315d. [PubMed:17190466 ]
LOTUS database [Link]

Showing NP-Card for (1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione (NP0284145)

MOL for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

3D MOL for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

3D SDF for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

3D-SDF for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

PDB for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

3D PDB for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

SMILES for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

INCHI for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

Structure for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)

3D Structure for NP0284145 ((1r,2s,6s,7s,8s,9s,12e)-2-[(2e,4e)-hexa-2,4-dienoyl]-5,6,9-trihydroxy-12-[(2e,4e)-1-hydroxyhexa-2,4-dien-1-ylidene]-1,4,6,9-tetramethyltricyclo[6.2.2.0²,⁷]dodec-4-ene-3,10,11-trione)