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Showing NP-Card for (+)-neodihydrocarveol (NP0283964)

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Record Information
Version2.0
Created at2022-09-09 11:27:44 UTC
Updated at2022-09-09 11:27:45 UTC
NP-MRD IDNP0283964
Secondary Accession NumbersNone
Natural Product Identification
Common Name(+)-neodihydrocarveol
DescriptionNeodihydrocarveol belongs to the class of organic compounds known as menthane monoterpenoids. These are monoterpenoids with a structure based on the o-, m-, or p-menthane backbone. P-menthane consists of the cyclohexane ring with a methyl group and a (2-methyl)-propyl group at the 1 and 4 ring position, respectively. The o- and m- menthanes are much rarer, and presumably arise by alkyl migration of p-menthanes. Thus, neodihydrocarveol is considered to be an isoprenoid lipid molecule. (+)-neodihydrocarveol is found in Houttuynia cordata. Neodihydrocarveol is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0283964 ((+)-neodihydrocarveol)


  Mrv0541 02241222002D          

 11 11  0  0  1  0            999 V2000
    0.2598    2.3250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2598    1.5000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4547    1.0875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4547    0.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2598   -0.1500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9743    0.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9743    1.0875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6887    1.5000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2598   -0.9750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4547   -1.3875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9743   -1.3875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  1  0  0  0
  5  9  1  6  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
M  END
Download

3D MOL for NP0283964 ((+)-neodihydrocarveol)

     RDKit          3D

 29 29  0  0  0  0  0  0  0  0999 V2000
   -2.7431    0.1203    1.1325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1784   -0.5722    0.1677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7753   -1.8320   -0.3223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9189   -0.0826   -0.4420 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1768   -1.0948   -0.3525 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2849   -0.6288    0.5654 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8889    0.6798    0.1541 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0545    0.4524   -0.7738 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8844    1.6437   -0.3702 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8004    1.7224   -1.7332 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4751    1.2240    0.2059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3008    1.0336    1.4802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6555   -0.2290    1.5783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4586   -2.7134    0.2924 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8889   -1.8114   -0.2591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5051   -1.9718   -1.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1238    0.1652   -1.5074 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1854   -2.0646    0.0724 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5902   -1.3592   -1.3557 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8505   -0.6047    1.6022 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0664   -1.4434    0.6086 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3267    1.1352    1.0909 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5070    1.4285   -1.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8280   -0.1689   -1.6371 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8313   -0.0954   -0.1653 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0636    2.6682    0.0217 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5383    1.3112   -2.2228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2799    1.0603    1.2853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2034    2.0272    0.0824 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4 11  1  0
 11  9  1  0
  9 10  1  0
  4  2  1  0
  2  3  1  0
  2  1  2  3
  9  7  1  0
  8 23  1  0
  8 24  1  0
  8 25  1  0
  7 22  1  1
  6 20  1  0
  6 21  1  0
  5 18  1  0
  5 19  1  0
  4 17  1  6
 11 28  1  0
 11 29  1  0
  9 26  1  1
 10 27  1  0
  3 14  1  0
  3 15  1  0
  3 16  1  0
  1 12  1  0
  1 13  1  0
M  END
Download

3D SDF for NP0283964 ((+)-neodihydrocarveol)


  Mrv0541 02241222002D          

 11 11  0  0  1  0            999 V2000
    0.2598    2.3250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2598    1.5000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4547    1.0875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4547    0.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2598   -0.1500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9743    0.2625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9743    1.0875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6887    1.5000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2598   -0.9750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4547   -1.3875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9743   -1.3875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  1  0  0  0
  5  9  1  6  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0283964

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@H](C[C@@H]1O)C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C10H18O/c1-7(2)9-5-4-8(3)10(11)6-9/h8-11H,1,4-6H2,2-3H3/t8-,9-,10+/m1/s1

> <INCHI_KEY>
KRCZYMFUWVJCLI-BBBLOLIVSA-N

> <FORMULA>
C10H18O

> <MOLECULAR_WEIGHT>
154.2493

> <EXACT_MASS>
154.135765198

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
18.648359760264064

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,5R)-2-methyl-5-(prop-1-en-2-yl)cyclohexan-1-ol

> <ALOGPS_LOGP>
2.70

> <JCHEM_LOGP>
2.316627336

> <ALOGPS_LOGS>
-2.07

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.994600424312566

> <JCHEM_PKA_STRONGEST_BASIC>
-1.051561774405684

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
47.22279999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.32e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(+)-neodihydrocarveol

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for NP0283964 ((+)-neodihydrocarveol)

Download
PDB for NP0283964 ((+)-neodihydrocarveol)
HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0       0.485   4.340   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.485   2.800   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.849   2.030   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.849   0.490   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.485  -0.280   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.819   0.490   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.819   2.030   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       3.152   2.800   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.485  -1.820   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.849  -2.590   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.819  -2.590   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    9                                                  
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7                                                            
CONECT    9    5   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   22    0
END

Download
3D PDB for NP0283964 ((+)-neodihydrocarveol)
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SMILES for NP0283964 ((+)-neodihydrocarveol)
C[C@@H]1CC[C@H](C[C@@H]1O)C(C)=C
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INCHI for NP0283964 ((+)-neodihydrocarveol)
InChI=1S/C10H18O/c1-7(2)9-5-4-8(3)10(11)6-9/h8-11H,1,4-6H2,2-3H3/t8-,9-,10+/m1/s1
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View in JSmol
Synonyms
ValueSource
(1R,2S,4R)-Neo-dihydrocarveolChEBI
(1R,2S,4R)-NeodihydrocarveolChEBI
(1S,2R,5R)-5-Isopropenyl-2-methylcyclohexanolChEBI
Chemical FormulaC10H18O
Average Mass154.2493 Da
Monoisotopic Mass154.13577 Da
IUPAC Name(1S,2R,5R)-2-methyl-5-(prop-1-en-2-yl)cyclohexan-1-ol
Traditional Name(+)-neodihydrocarveol
CAS Registry NumberNot Available
SMILES
C[C@@H]1CC[C@H](C[C@@H]1O)C(C)=C
InChI Identifier
InChI=1S/C10H18O/c1-7(2)9-5-4-8(3)10(11)6-9/h8-11H,1,4-6H2,2-3H3/t8-,9-,10+/m1/s1
InChI KeyKRCZYMFUWVJCLI-BBBLOLIVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Houttuynia cordataLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as menthane monoterpenoids. These are monoterpenoids with a structure based on the o-, m-, or p-menthane backbone. P-menthane consists of the cyclohexane ring with a methyl group and a (2-methyl)-propyl group at the 1 and 4 ring position, respectively. The o- and m- menthanes are much rarer, and presumably arise by alkyl migration of p-menthanes.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassPrenol lipids  
Sub ClassMonoterpenoids  
Direct ParentMenthane monoterpenoids  
Alternative Parents
Substituents
  • P-menthane monoterpenoid
    • 

  • Monocyclic monoterpenoid
    • 

  • Cyclohexanol
    • 

  • Cyclic alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.7ALOGPS
logP2.32ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)18.99ChemAxon
pKa (Strongest Basic)-1.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity47.22 m³·mol⁻¹ChemAxon
Polarizability18.65 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB004796  
KNApSAcK IDC00030810  
Chemspider IDNot Available
KEGG Compound IDC11397  
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound443164  
PDB IDNot Available
ChEBI ID152  
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]