NP-MRD: Showing NP-Card for 3'-deoxysappanol (NP0283937)

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Record Information

Version

2.0

Created at

2022-09-09 11:24:47 UTC

Updated at

2022-09-09 11:24:47 UTC

NP-MRD ID

NP0283937

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3'-deoxysappanol

Description

3'-Deoxysappanol belongs to the class of organic compounds known as homoisoflavans. These are homoisoflavonoids with a structure based on the chromane system. Chromone is a bicyclic compound consisting of a 3,4-dihydro-1-benzopyran. 3'-Deoxysappanol is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. 3'-deoxysappanol was first documented in 2012 (PMID: 21853494). Based on a literature review very few articles have been published on 3'-deoxysappanol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 39  0  0  0  0  0  0  0  0999 V2000
   -6.1254    0.2839    1.3776 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8856    0.0758    0.7537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2770    1.1372    0.1475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0529    0.9595   -0.4756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4107   -0.2543   -0.5138 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1325   -0.3999   -1.1768 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0847   -0.1661   -0.3579 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2295    1.1642    0.0519 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2128   -1.0246    0.8590 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5597   -1.2908    1.2065 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5767   -0.4625    0.7565 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6600   -0.1228    1.5393 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6320    0.7066    1.0216 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7343    1.0511    1.8210 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5080    1.1827   -0.2662 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4391    0.8588   -1.0649 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4719    0.0249   -0.5296 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2747   -0.3871   -1.3121 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1109    0.4927   -2.3750 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0359   -1.3170    0.1018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2756   -1.1507    0.7364 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5828   -0.5058    1.8312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7697    2.0997    0.1687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5968    1.7926   -0.9396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0629   -1.4616   -1.5581 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0589    0.2260   -2.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0539    1.7203   -0.7568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3285   -2.0068    0.7475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2564   -0.5438    1.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7247   -0.5204    2.5555 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5281    0.3985    1.7315 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2786    1.8294   -0.6514 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3166    1.2179   -2.0783 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2998   -1.4370   -1.5955 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5509    0.1132   -3.1891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6203   -2.3102    0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7751   -1.9737    1.2215 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 18  1  0
 18 17  1  0
 17 16  2  0
 16 15  1  0
 15 13  2  0
 13 14  1  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 10  9  1  0
  9  7  1  0
  7  8  1  1
  7  6  1  0
  6  5  1  0
  5  4  2  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  2 21  1  0
 21 20  2  0
  7 18  1  0
 20  5  1  0
 11 17  1  0
 19 35  1  0
 18 34  1  6
 16 33  1  0
 15 32  1  0
 14 31  1  0
 12 30  1  0
  9 28  1  0
  9 29  1  0
  8 27  1  0
  6 25  1  0
  6 26  1  0
  4 24  1  0
  3 23  1  0
  1 22  1  0
 21 37  1  0
 20 36  1  0
M  END


  Mrv1652309092213242D          

 21 23  0  0  1  0            999 V2000
   -1.2267    2.0067    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9445    1.2315    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1320    1.0882    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1501    0.3130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3802   -0.3190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0980   -1.0942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4323   -2.0127    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926   -0.1757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4748    0.5995    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
  7 18  1  0  0  0  0
 18 19  1  6  0  0  0
  5 20  1  0  0  0  0
 20 21  2  0  0  0  0
  2 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0283937

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@H]1C2=CC=C(O)C=C2OC[C@]1(O)CC1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H16O5/c17-11-3-1-10(2-4-11)8-16(20)9-21-14-7-12(18)5-6-13(14)15(16)19/h1-7,15,17-20H,8-9H2/t15-,16+/m0/s1

> <INCHI_KEY>
IYAYKNOVHBOSPH-JKSUJKDBSA-N

> <FORMULA>
C16H16O5

> <MOLECULAR_WEIGHT>
288.299

> <EXACT_MASS>
288.099773615

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
29.546249419989994

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,4S)-3-[(4-hydroxyphenyl)methyl]-3,4-dihydro-2H-1-benzopyran-3,4,7-triol

> <JCHEM_LOGP>
1.6359043603333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.226496952541327

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.343051885211905

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6619061222677844

> <JCHEM_POLAR_SURFACE_AREA>
90.15

> <JCHEM_REFRACTIVITY>
76.2198

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R,4S)-3-[(4-hydroxyphenyl)methyl]-2,4-dihydro-1-benzopyran-3,4,7-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  O   UNK     0      -2.290   3.746   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.763   2.299   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.246   2.031   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.280   0.584   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.710  -0.595   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.183  -2.043   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.807  -3.757   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.226  -0.328   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.753   1.119   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   20                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9   18                                             
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18                                                  
CONECT   18   17    7   19                                                  
CONECT   19   18                                                            
CONECT   20    5   21                                                       
CONECT   21   20    2                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₆O₅

Average Mass

288.2990 Da

Monoisotopic Mass

288.09977 Da

IUPAC Name

(3R,4S)-3-[(4-hydroxyphenyl)methyl]-3,4-dihydro-2H-1-benzopyran-3,4,7-triol

Traditional Name

(3R,4S)-3-[(4-hydroxyphenyl)methyl]-2,4-dihydro-1-benzopyran-3,4,7-triol

CAS Registry Number

Not Available

SMILES

O[C@H]1C2=CC=C(O)C=C2OC[C@]1(O)CC1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C16H16O5/c17-11-3-1-10(2-4-11)8-16(20)9-21-14-7-12(18)5-6-13(14)15(16)19/h1-7,15,17-20H,8-9H2/t15-,16+/m0/s1

InChI Key

IYAYKNOVHBOSPH-JKSUJKDBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as homoisoflavans. These are homoisoflavonoids with a structure based on the chromane system. Chromone is a bicyclic compound consisting of a 3,4-dihydro-1-benzopyran.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Homoisoflavonoids

Sub Class

Homoisoflavans

Direct Parent

Homoisoflavans

Alternative Parents

Substituents

Homoisoflavan
Chromane
Benzopyran
1-benzopyran
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Benzenoid
Tertiary alcohol
Secondary alcohol
1,2-diol
Polyol
Ether
Oxacycle
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

polyphenol (CHEBI:69197 )
homoisoflavonoid (CHEBI:69197 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.64	ChemAxon
pKa (Strongest Acidic)	9.34	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	90.15 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	76.22 m³·mol⁻¹	ChemAxon
Polarizability	29.55 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28479506

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13846660

PDB ID

Not Available

ChEBI ID

69197

Good Scents ID

Not Available

References

General References

Xu P, Guan S, Feng R, Tang R, Guo D: Separation of four homoisoflavonoids from Caesalpinia sappan by high-speed counter-current chromatography. Phytochem Anal. 2012 May-Jun;23(3):228-31. doi: 10.1002/pca.1347. Epub 2011 Aug 18. [PubMed:21853494 ]
LOTUS database [Link]

Showing NP-Card for 3'-deoxysappanol (NP0283937)

MOL for NP0283937 (3'-deoxysappanol)

3D MOL for NP0283937 (3'-deoxysappanol)

3D SDF for NP0283937 (3'-deoxysappanol)

3D-SDF for NP0283937 (3'-deoxysappanol)

PDB for NP0283937 (3'-deoxysappanol)

3D PDB for NP0283937 (3'-deoxysappanol)

SMILES for NP0283937 (3'-deoxysappanol)

INCHI for NP0283937 (3'-deoxysappanol)

Structure for NP0283937 (3'-deoxysappanol)

3D Structure for NP0283937 (3'-deoxysappanol)