NP-MRD: Showing NP-Card for (6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene (NP0283868)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-09 11:18:52 UTC

Updated at

2022-09-09 11:18:52 UTC

NP-MRD ID

NP0283868

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene

Description

Manzamine C belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. (6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene was first documented in 2003 (PMID: 15206780). Based on a literature review a small amount of articles have been published on manzamine C (PMID: 15762999) (PMID: 12704863).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092213182D          

 26 29  0  0  0  0            999 V2000
    5.0024   -5.0745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1918   -4.9206    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8576   -4.0819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1343   -3.6851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2883   -2.8745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1067   -2.7705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7252   -2.1129    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4703   -1.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6633   -1.1567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4084   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9604    0.2410    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7054    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8985    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3464    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6014   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.6855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2665   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4595   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0925    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1624    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5214    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5357   -2.2669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8076   -3.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2690   -3.6707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5409   -4.4496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 17 22  2  0  0  0  0
 14 22  1  0  0  0  0
  7 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
  1 26  1  0  0  0  0
M  END

     RDKit          3D

 55 58  0  0  0  0  0  0  0  0999 V2000
   -5.2078    0.3247    0.1913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9592   -0.1916   -0.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2062    0.5254   -2.0034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1921   -0.4287   -2.6029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8372   -0.2991   -1.9360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7501   -1.0899   -0.6442 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2329   -0.3909    0.4413 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0846   -0.5873    0.8748 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8405   -1.6951    0.1733 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2040   -1.7670    0.7484 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5313   -2.7269    1.6275 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7440   -2.8321    2.1815 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7190   -1.9275    1.8525 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4541   -0.9178    0.9586 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1683   -0.8481    0.4035 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1276    0.2061   -0.4402 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3271    0.8326   -0.4653 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7530    1.9382   -1.1676 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0656    2.3484   -0.9785 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8919    1.6553   -0.1125 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4482    0.5462    0.5855 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1443    0.1365    0.3993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9942    0.6199    1.0430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2254    0.1703    1.7790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0910    1.4019    2.0078 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7988    1.6461    0.6613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7821   -0.2932    0.8965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3158   -1.1948   -1.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7873    1.4904   -1.7492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9455    0.7461   -2.8339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5870   -1.4504   -2.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1135   -0.1900   -3.6819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0869   -0.6448   -2.6762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6459    0.7785   -1.7696 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1163   -1.9776   -0.8628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7781   -1.5302   -0.4850 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1781   -0.7821    1.9833 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6521    0.3656    0.7341 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3644   -2.6758    0.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8671   -1.5336   -0.9270 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9467   -3.6154    2.8740 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7217   -1.9589    2.2673 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2832    0.4998   -1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1077    2.4820   -1.8464 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4623    3.2107   -1.5012 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9221    1.9581    0.0515 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0592   -0.0113    1.2614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3602    1.1578    1.7933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2395    1.3861    0.2785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9927   -0.2240    2.7913 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646   -0.6337    1.2518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4597    2.2627    2.2300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8091    1.2686    2.8229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0865    2.2041    0.0694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7022    2.2560    0.9293 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 22  2  0
 22 21  1  0
 21 20  2  0
 20 19  1  0
 19 18  2  0
  8  7  1  0
  7 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  0
 26  1  1  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
 15 10  1  0
 18 17  1  0
  6  7  1  0
 22 14  1  0
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 12 41  1  0
 13 42  1  0
 16 43  1  0
 21 47  1  0
 20 46  1  0
 19 45  1  0
 18 44  1  0
 23 48  1  0
 23 49  1  0
 24 50  1  0
 24 51  1  0
 25 52  1  0
 25 53  1  0
 26 54  1  0
 26 55  1  0
  1 27  1  0
  2 28  1  0
  3 29  1  0
  3 30  1  0
  4 31  1  0
  4 32  1  0
  5 33  1  0
  5 34  1  0
  6 35  1  0
  6 36  1  0
M  END


  Mrv1652309092213182D          

 26 29  0  0  0  0            999 V2000
    5.0024   -5.0745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1918   -4.9206    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8576   -4.0819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1343   -3.6851    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2883   -2.8745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1067   -2.7705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7252   -2.1129    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4703   -1.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6633   -1.1567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4084   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9604    0.2410    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7054    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8985    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3464    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6014   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.6855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2665   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4595   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0925    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1624    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5214    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5357   -2.2669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8076   -3.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2690   -3.6707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5409   -4.4496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 17 22  2  0  0  0  0
 14 22  1  0  0  0  0
  7 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
  1 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0283868

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C(CC1=NC=CC2=C1NC1=C2C=CC=C1)N1CCCC\C=C/CCCC1

> <INCHI_IDENTIFIER>
InChI=1S/C23H29N3/c1-2-4-6-10-17-26(16-9-5-3-1)18-14-22-23-20(13-15-24-22)19-11-7-8-12-21(19)25-23/h1-2,7-8,11-13,15,25H,3-6,9-10,14,16-18H2/b2-1-

> <INCHI_KEY>
LUYZVPNPJGYOIP-UPHRSURJSA-N

> <FORMULA>
C23H29N3

> <MOLECULAR_WEIGHT>
347.506

> <EXACT_MASS>
347.236147946

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
41.5026847860192

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(6Z)-1-(2-{9H-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene

> <JCHEM_LOGP>
4.844382456

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.577887915155824

> <JCHEM_PKA_STRONGEST_BASIC>
10.412254265117127

> <JCHEM_POLAR_SURFACE_AREA>
31.92

> <JCHEM_REFRACTIVITY>
110.2988

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(6Z)-1-(2-{9H-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       9.338  -9.472   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.825  -9.185   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.201  -7.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.851  -6.879   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.138  -5.366   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.666  -5.172   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       8.820  -3.944   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       8.344  -2.479   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.838  -2.159   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.362  -0.695   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       7.393   0.450   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       6.917   1.914   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.410   2.235   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.380   1.090   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.856  -0.374   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       3.610  -1.280   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       2.364  -0.374   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.858  -0.695   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.173   0.450   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.303   1.914   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.810   2.235   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.840   1.090   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.333  -4.231   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.841  -5.685   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.836  -6.852   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.343  -8.306   0.000  0.00  0.00           C+0
CONECT    1    2   26                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   23                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   22                                                  
CONECT   15   14   10   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   17   14                                                  
CONECT   23    7   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25    1                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₂₉N₃

Average Mass

347.5060 Da

Monoisotopic Mass

347.23615 Da

IUPAC Name

(6Z)-1-(2-{9H-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene

Traditional Name

(6Z)-1-(2-{9H-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene

CAS Registry Number

Not Available

SMILES

C(CC1=NC=CC2=C1NC1=C2C=CC=C1)N1CCCC\C=C/CCCC1

InChI Identifier

InChI=1S/C23H29N3/c1-2-4-6-10-17-26(16-9-5-3-1)18-14-22-23-20(13-15-24-22)19-11-7-8-12-21(19)25-23/h1-2,7-8,11-13,15,25H,3-6,9-10,14,16-18H2/b2-1-

InChI Key

LUYZVPNPJGYOIP-UPHRSURJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Harmala alkaloids

Sub Class

Not Available

Direct Parent

Harmala alkaloids

Alternative Parents

Substituents

Harman
Beta-carboline
Pyridoindole
Indole
Indole or derivatives
Aralkylamine
Pyridine
Benzenoid
Heteroaromatic compound
Pyrrole
Tertiary aliphatic amine
Tertiary amine
Organoheterocyclic compound
Azacycle
Organonitrogen compound
Amine
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.84	ChemAxon
pKa (Strongest Acidic)	13.58	ChemAxon
pKa (Strongest Basic)	10.41	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	31.92 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	110.3 m³·mol⁻¹	ChemAxon
Polarizability	41.5 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8103887

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9928254

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Mayer AM, Hall ML, Lynch SM, Gunasekera SP, Sennett SH, Pomponi SA: Differential modulation of microglia superoxide anion and thromboxane B2 generation by the marine manzamines. BMC Pharmacol. 2005 Mar 11;5:6. doi: 10.1186/1471-2210-5-6. [PubMed:15762999 ]
Nakagawa M, Nagata T, Ono K, Uchida H, Watanabe T, Hatakeyama K, Akiba M, Fuwa M, Arisawa M, Nishida A: Recent developments in marine indole alkaloid synthesis. Adv Exp Med Biol. 2003;527:609-20. doi: 10.1007/978-1-4615-0135-0_70. [PubMed:15206780 ]
Nakagawa M: [Synthetic study of biologically important nitrogen containing natural products: development of new methodology and design of leading compounds for new pharmaceuticals]. Yakugaku Zasshi. 2003 Apr;123(4):225-48. doi: 10.1248/yakushi.123.225. [PubMed:12704863 ]
LOTUS database [Link]

Showing NP-Card for (6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene (NP0283868)

MOL for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

3D MOL for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

3D SDF for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

3D-SDF for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

PDB for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

3D PDB for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

SMILES for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

INCHI for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

Structure for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)

3D Structure for NP0283868 ((6z)-1-(2-{9h-pyrido[3,4-b]indol-1-yl}ethyl)-1-azacycloundec-6-ene)