NP-MRD: Showing NP-Card for 5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid (NP0283305)

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Record Information

Version

2.0

Created at

2022-09-09 10:30:47 UTC

Updated at

2022-09-09 10:30:47 UTC

NP-MRD ID

NP0283305

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid

Description

5-Hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,4a,9,10,10a-hexahydrophenanthrene-1-carboxylic acid belongs to the class of organic compounds known as 1-hydroxysteroids. These are steroids carrying a hydroxyl group at the 1-position of the steroid backbone. 5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid is found in Clerodendrum bungei. 5-Hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,4a,9,10,10a-hexahydrophenanthrene-1-carboxylic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004201505142D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004201505142D          

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  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  7 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
  5 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 24 33  1  0  0  0  0
 33 34  1  0  0  0  0
 12 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0283305

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(O)CC1=CC2=C(C(O)=C1OC1OC(CO)C(O)C(O)C1O)C1(C)CCC(C)=C(C1CC2=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H34O11/c1-10-4-5-26(3)14(17(10)24(34)35)8-15(29)13-7-12(6-11(2)28)23(20(31)18(13)26)37-25-22(33)21(32)19(30)16(9-27)36-25/h7,11,14,16,19,21-22,25,27-28,30-33H,4-6,8-9H2,1-3H3,(H,34,35)

> <INCHI_KEY>
PURXKVQXMAJBLE-UHFFFAOYSA-N

> <FORMULA>
C26H34O11

> <MOLECULAR_WEIGHT>
522.547

> <EXACT_MASS>
522.210111915

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
53.58653575654206

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,4a,9,10,10a-hexahydrophenanthrene-1-carboxylic acid

> <ALOGPS_LOGP>
0.36

> <JCHEM_LOGP>
-0.04019738033333359

> <ALOGPS_LOGS>
-2.61

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.08169914765124

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.8032522365629386

> <JCHEM_PKA_STRONGEST_BASIC>
-2.603611357221797

> <JCHEM_POLAR_SURFACE_AREA>
194.20999999999998

> <JCHEM_REFRACTIVITY>
128.7925

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.28e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-15         0                                  
HETATM    1  C   UNK     0       2.255   1.127   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.485  -0.206   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -0.055  -0.206   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.255  -1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.565  -0.206   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.875   1.127   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       6.105   2.461   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.035  -1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.185  -2.874   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.645  -2.874   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.875  -4.207   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       3.795  -4.207   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.255  -4.207   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       1.485  -2.874   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.055  -2.874   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.825  -1.540   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -2.365  -1.540   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -0.825  -4.207   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -2.365  -4.207   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -0.055  -5.541   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -0.825  -6.875   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       1.485  -5.541   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.255  -6.875   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      11.495   1.127   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      13.035   1.127   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0      10.725   2.461   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   22                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   19                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13   35                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18   19                                             
CONECT   18   17                                                            
CONECT   19   17    7   20                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20    5   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   33                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   24   34                                                  
CONECT   34   33                                                            
CONECT   35   12   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   80    0
END

View in JSmol

Synonyms

Value	Source
5-Hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,4a,9,10,10a-hexahydrophenanthrene-1-carboxylate	Generator

Chemical Formula

C₂₆H₃₄O₁₁

Average Mass

522.5470 Da

Monoisotopic Mass

522.21011 Da

IUPAC Name

5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,4a,9,10,10a-hexahydrophenanthrene-1-carboxylic acid

Traditional Name

5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid

CAS Registry Number

Not Available

SMILES

CC(O)CC1=CC2=C(C(O)=C1OC1OC(CO)C(O)C(O)C1O)C1(C)CCC(C)=C(C1CC2=O)C(O)=O

InChI Identifier

InChI=1S/C26H34O11/c1-10-4-5-26(3)14(17(10)24(34)35)8-15(29)13-7-12(6-11(2)28)23(20(31)18(13)26)37-25-22(33)21(32)19(30)16(9-27)36-25/h7,11,14,16,19,21-22,25,27-28,30-33H,4-6,8-9H2,1-3H3,(H,34,35)

InChI Key

PURXKVQXMAJBLE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clerodendrum bungei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-hydroxysteroids. These are steroids carrying a hydroxyl group at the 1-position of the steroid backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Hydroxysteroids

Direct Parent

1-hydroxysteroids

Alternative Parents

Substituents

Abeoabietane diterpenoid
Diterpenoid
1-hydroxysteroid
Phenolic glycoside
Hydrophenanthrene
Phenanthrene
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Tetralin
Aryl alkyl ketone
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
Benzenoid
Oxane
Monosaccharide
Secondary alcohol
Ketone
Carboxylic acid derivative
Carboxylic acid
Polyol
Oxacycle
Acetal
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Carbonyl group
Primary alcohol
Alcohol
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.36	ALOGPS
logP	-0.04	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	3.8	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	194.21 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	128.79 m³·mol⁻¹	ChemAxon
Polarizability	53.59 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74342785

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid (NP0283305)

MOL for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

3D MOL for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

3D SDF for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

3D-SDF for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

PDB for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

3D PDB for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

SMILES for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

INCHI for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

Structure for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)

3D Structure for NP0283305 (5-hydroxy-7-(2-hydroxypropyl)-2,4a-dimethyl-9-oxo-6-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4,10,10a-tetrahydrophenanthrene-1-carboxylic acid)