NP-MRD: Showing NP-Card for (1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate (NP0282579)

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Record Information

Version

2.0

Created at

2022-09-09 09:28:04 UTC

Updated at

2022-09-09 09:28:04 UTC

NP-MRD ID

NP0282579

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate

Description

(1R,2S,3E,5S,7S,8R,11R,12R,13S,14S,15S,17R)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]Heptadec-3-en-15-yl acetate belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. (1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate is found in Erythropodium caribaeorum. Based on a literature review very few articles have been published on (1R,2S,3E,5S,7S,8R,11R,12R,13S,14S,15S,17R)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]Heptadec-3-en-15-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309092211282D          

 34 37  0  0  1  0            999 V2000
    3.6913   -1.5794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309092211282D          

 34 37  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0282579

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1C(=O)O[C@H]2[C@@H](Cl)C(=C)[C@@H](O)\C=C\[C@H]3[C@H]4C(=O)[C@@](C)(OC(C)=O)[C@H]([C@H](OC(C)=O)[C@]12O)[C@@]34C

> <INCHI_IDENTIFIER>
InChI=1S/C24H29ClO9/c1-9-14(28)8-7-13-15-18(29)23(6,34-12(4)27)17(22(13,15)5)20(32-11(3)26)24(31)10(2)21(30)33-19(24)16(9)25/h7-8,10,13-17,19-20,28,31H,1H2,2-6H3/b8-7+/t10-,13-,14-,15-,16-,17+,19-,20-,22-,23-,24-/m0/s1

> <INCHI_KEY>
SVWXDQMPMMYOJL-GZOFGOLLSA-N

> <FORMULA>
C24H29ClO9

> <MOLECULAR_WEIGHT>
496.94

> <EXACT_MASS>
496.1500102

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
47.51992870168981

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,3E,5S,7S,8R,11R,12R,13S,14S,15S,17R)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0^{2,17}.0^{8,12}]heptadec-3-en-15-yl acetate

> <JCHEM_LOGP>
0.8544092006666664

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.228289775992646

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.36162176668294

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1390009262486185

> <JCHEM_POLAR_SURFACE_AREA>
136.43

> <JCHEM_REFRACTIVITY>
117.28619999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,3E,5S,7S,8R,11R,12R,13S,14S,15S,17R)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0^{2,17}.0^{8,12}]heptadec-3-en-15-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-SEP-22         0                                  
HETATM    1  C   UNK     0       6.890  -2.948   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.655  -1.226   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.587  -2.336   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.889  -3.822   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.202  -1.663   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.413  -0.138   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.530   1.297   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.978   0.773   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.503   0.562   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.477  -0.555   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       7.176   1.947   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.019   1.317   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       8.253   3.743   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       8.532   5.556   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.472   6.808   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       9.271   7.021   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.739   2.793   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.602   1.518   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.017   3.615   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.560   4.696   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.872   4.581   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       4.026   6.264   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       8.138   1.628   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.185   3.245   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       9.084   2.843   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.845   4.518   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.532   2.319   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      12.120   2.742   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      10.481   0.780   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       9.001   0.353   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.329  -1.033   0.000  0.00  0.00           C+0
HETATM   32 Cl   UNK     0       9.640  -2.096   0.000  0.00  0.00          Cl+0
HETATM   33  C   UNK     0       4.203   2.683   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       2.706   3.296   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   31                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   33                                                  
CONECT    8    7    9   33                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13   17                                             
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   11   18   33                                                  
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   18   24   25   30                                             
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   23   31                                                  
CONECT   31   30    2   32                                                  
CONECT   32   31                                                            
CONECT   33   17    7    8   34                                             
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Value	Source
(1R,2S,3E,5S,7S,8R,11R,12R,13S,14S,15S,17R)-13-(Acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0,.0,]heptadec-3-en-15-yl acetic acid	Generator

Chemical Formula

C₂₄H₂₉ClO₉

Average Mass

496.9400 Da

Monoisotopic Mass

496.15001 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H]1C(=O)O[C@H]2[C@@H](Cl)C(=C)[C@@H](O)\C=C\[C@H]3[C@H]4C(=O)[C@@](C)(OC(C)=O)[C@H]([C@H](OC(C)=O)[C@]12O)[C@@]34C

InChI Identifier

InChI=1S/C24H29ClO9/c1-9-14(28)8-7-13-15-18(29)23(6,34-12(4)27)17(22(13,15)5)20(32-11(3)26)24(31)10(2)21(30)33-19(24)16(9)25/h7-8,10,13-17,19-20,28,31H,1H2,2-6H3/b8-7+/t10-,13-,14-,15-,16-,17+,19-,20-,22-,23-,24-/m0/s1

InChI Key

SVWXDQMPMMYOJL-GZOFGOLLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Erythropodium caribaeorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Alpha-acyloxy ketone
Gamma butyrolactone
Tertiary alcohol
Tetrahydrofuran
Carboxylic acid ester
Ketone
Lactone
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Alkyl halide
Organooxygen compound
Organochloride
Organohalogen compound
Alkyl chloride
Organic oxygen compound
Alcohol
Carbonyl group
Organic oxide
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29213220

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11071090

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate (NP0282579)

MOL for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

3D MOL for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

3D SDF for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

3D-SDF for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

PDB for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

3D PDB for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

SMILES for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

INCHI for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

Structure for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)

3D Structure for NP0282579 ((1r,2s,3e,5s,7s,8r,11r,12r,13s,14s,15s,17r)-13-(acetyloxy)-7-chloro-5,12-dihydroxy-1,11,15-trimethyl-6-methylidene-10,16-dioxo-9-oxatetracyclo[12.3.0.0²,¹⁷.0⁸,¹²]heptadec-3-en-15-yl acetate)